Hg_chrom2_TN10mRNA_4191
Organism: Heterodera glycines Gene Locus: chr2:10305671-10307234 Feature type: polypeptideProtein Sequence
Length: 324
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.292 | 0.431 | 0.281 | 1.064 | 0.874 | 1.345 | 2.499 | 0.617 | 0.549 | 0.459 | 0.514 | 0.908 | 0.772 | 3.739 | 0.756 | 0.573 | 0.354 | 0.701 | 0.237 | 0.545 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3975
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
GRPGRHGKPGKPG
|
11-48
|
0.844
|
— | — | — | — |
0.000
|
— | — |
0.032
|
0.056
|
0.009
|
0.137
|
0.400
|
0.311
|
0.445
|
0.003
|
0.721
|
0.271
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007263
|
1.000
|
1.000
|
Hsc_gene_15621.t1
|
Hsc_gene_15621.t1
|
F23H12.4b;T05A1.2
|
P17656.1 Cuticle collagen 2 [Caenorhabditis elegans]
|
KAF7637760.1 Col_cuticle_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.922|GO:0032501_0.832|GO:0032502_0.816|GO:0048856_0.816|GO:0007275_0.800|GO:0005575_0.789|GO:0110165_0.788|GO:0030312_0.693|GO:0071944_0.693|GO:0040002_0.670|GO:0042335_0.670|GO:0031012_0.588|GO:0062023_0.588|GO:0042303_0.511|GO:0018996_0.503|GO:0042338_0.503
|
IPR002486+12-64_15-64+|IPR008160+176-231+|IPR050632+18-308+
|
SM01088+12-64+
|
PF01391+176-231+Collagen_triple_helix_repeat_(20_copies)|PF01484+15-64+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+18-308+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
115-324
|
1.000
|
1-114
|
3hr2_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.930
|
31694.690
|
7.482
|
3.000
|
15.123
|
6.173
|
28.395
|
71.605
|
8.333
|
6.790
|
68.827
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
496.409
|
1107.871
|
9.154
|
8.451
|
12.985
|
3416.262
|
62.101
|
878.683
|
19.350
|
96.462
|
63.414
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-7.144
|
-7.172
|
— | — |
8.050
|
-5.773
|
-2.078
|
-3.677
|
— | — | — | — | — |
No JSON data available for plots.