Hg_chrom2_TN10mRNA_4194
Organism: Heterodera glycines Gene Locus: chr2:10327344-10328647 Feature type: polypeptideProtein Sequence
Length: 158
(Signal peptide: 1-39)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.545 | 0.589 | 0.69 | 0.873 | 1.16 | 0.811 | 0.527 | 0.633 | 0.703 | 0.599 | 1.055 | 4.84 | 1.582 | 0.974 | 1.679 | 1.899 | 0.311 | 0.096 | 0.487 | 1.117 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3978
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KRKSAYMRFGKRKSA
|
— | — | — | — |
1-39
|
0.769
|
0.975
|
0.000
|
0.000
|
0.239
|
0.296
|
0.076
|
0.145
|
0.090
|
0.008
|
0.027
|
0.003
|
0.049
|
0.945
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007265
|
1.000
|
1.000
|
Hsc_gene_15624.t2
|
Hsc_gene_15624.t1;Hsc_gene_15624.t2
|
— | — |
AAP02990.1 FMRFamide-related peptide precursor [Heterodera glycines]
|
No
|
0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007218
|
— |
IPR002544+81-88_106-113_140-147+|IPR051041+95-158+
|
— |
PF01581+81-88_106-113_140-147+FMRFamide_related_peptide_family
|
— |
PTHR20986+95-158+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-158
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.860
|
17806.390
|
9.641
|
8.000
|
27.215
|
11.392
|
48.101
|
51.899
|
16.456
|
10.759
|
47.468
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
saddlebrown
|
2817.694
|
1152.076
|
10164.872
|
6386.839
|
1347.429
|
771.965
|
199.373
|
7101.912
|
475.728
|
1798.942
|
1231.850
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.913
|
2.333
|
-0.562
|
-2.277
|
-0.789
|
-1.943
|
3.103
|
-5.014
|
— |
3.923
|
— | — | — |