Hg_chrom2_TN10mRNA_4195
Organism: Heterodera glycines Gene Locus: chr2:10331040-10333896 Feature type: polypeptideProtein Sequence
Length: 329
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.308 | 0.212 | 0.663 | 0.943 | 0.709 | 2.65 | 2.207 | 0.608 | 0.338 | 0.452 | 0.414 | 1.609 | 0.507 | 3.098 | 0.62 | 0.608 | 0.698 | 0.829 | 0.234 | 0.447 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3979
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
20-58
|
0.971
|
— | — | — | — |
0.000
|
— | — |
0.048
|
0.074
|
0.014
|
0.119
|
0.488
|
0.274
|
0.351
|
0.003
|
0.683
|
0.259
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007266
|
1.000
|
1.000
|
Hsc_gene_15625.t1
|
Hsc_gene_15625.t1
|
— |
P20631.1 Cuticle collagen 13 [Caenorhabditis elegans]
|
KAH7694787.1 Nematode cuticle collagen, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+22-74_25-74+|IPR008160+189-245_255-312+|IPR050632+27-327+
|
SM01088+22-74+
|
PF01391+189-245_255-312+Collagen_triple_helix_repeat_(20_copies)|PF01484+25-74+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+27-327+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
130-329
|
1.000
|
1-129
|
9han_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.965
|
32650.360
|
4.892
|
-5.000
|
14.894
|
4.863
|
34.650
|
65.350
|
6.991
|
7.903
|
67.173
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
96.248
|
131.381
|
12.740
|
20.683
|
33.656
|
268.608
|
21.091
|
68.879
|
43.615
|
179.482
|
121.253
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.598
|
-2.805
|
0.809
|
0.674
|
3.010
|
-3.663
|
-2.077
|
-1.563
|
— | — | — | — | — |
No JSON data available for plots.