Hg_chrom2_TN10mRNA_4196
Organism: Heterodera glycines Gene Locus: chr2:10335272-10353038 Feature type: polypeptideProtein Sequence
Length: 2,236
(Signal peptide: 1-30)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.624 | 1.779 | 0.764 | 0.54 | 1.699 | 1.261 | 0.516 | 1.118 | 1.66 | 1.336 | 1.47 | 1.842 | 1.615 | 0.43 | 0.949 | 0.652 | 0.74 | 0.617 | 1.307 | 0.526 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3980
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.691
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|nucleus
|
nucleus
|
KKWK,KKALPNIARMASKWRKE,KKEEQEKVADDEQRGGKR
|
— | — | — | — |
1-30
|
— |
0.694
|
— |
0.000
|
0.630
|
0.252
|
0.013
|
0.541
|
0.163
|
0.139
|
0.096
|
0.072
|
0.093
|
0.153
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007267
|
1.000
|
1.000
|
Hsc_gene_15627.t1
|
Hsc_gene_15626.t1
|
— |
Q9WVP6.3 Poly(A) polymerase beta [Mus musculus]
|
XP_030626747.1 poly(A) polymerase type 3-like [Chanos chanos]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0016779|GO:0031123|GO:1990817
|
GO:0005575_0.743|GO:0110165_0.739|GO:0005622_0.698|GO:0016020_0.674|GO:0008150_0.634|GO:0043226_0.633|GO:0043229_0.633|GO:0043227_0.588|GO:0043231_0.588|GO:0003674_0.546|GO:0009987_0.527
|
IPR002934+1754-1800+|IPR007012+1927-2074+|IPR011068+2078-2201+|IPR043519+1745-1867_1763-1913+
|
— |
PF01909+1754-1800+Nucleotidyltransferase_domain|PF04928+1927-2074+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1765-2192+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
37-88;701-763
|
3.000
|
1-36;89-700;764-2236
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.570
|
261264.410
|
7.487
|
24.000
|
30.993
|
11.538
|
52.639
|
47.361
|
16.592
|
14.401
|
38.506
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
skyblue3
|
841.269
|
10.452
|
41.513
|
188.928
|
84.459
|
19.314
|
28.565
|
14.409
|
1095.452
|
2713.599
|
2020.107
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.763
|
4.043
|
2.293
|
-1.191
|
-2.115
|
— | — |
1.131
|
— | — |
-4.863
|
— | — |