Hg_chrom2_TN10mRNA_4197
Organism: Heterodera glycines Gene Locus: chr2:10355616-10359295 Feature type: polypeptideProtein Sequence
Length: 282
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.278 | 0.66 | 1.225 | 0.489 | 1.359 | 0.727 | 0.464 | 1.241 | 0.946 | 1.342 | 0.698 | 2.086 | 1.182 | 0.682 | 2.026 | 0.608 | 0.814 | 1.182 | 0.818 | 0.73 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3981
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.965
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRKTVEAERKRSAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.917
|
0.074
|
0.009
|
0.198
|
0.033
|
0.025
|
0.075
|
0.023
|
0.088
|
0.185
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003433
|
2.000
|
1.000
|
Hsc_gene_15628.t1
|
Hsc_gene_15628.t1
|
— |
Q0E474.2 Cyclin-T1-1 [Oryza sativa Japonica Group]
|
KAI1733319.1 cyclin-related protein FAM58A [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006357|GO:0016538
|
GO:0008150_0.924|GO:0009987_0.701|GO:0005575_0.693|GO:0110165_0.570|GO:0005622_0.505|GO:0065007_0.504
|
IPR006671+7-120+|IPR036915+9-120_122-220+|IPR043198+11-262+|IPR048055+7-118+
|
— |
PF00134+7-120+Cyclin,_N-terminal_domain
|
— |
PTHR10026+11-262+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
221-282
|
1.000
|
1-220
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.612
|
32273.090
|
7.098
|
2.500
|
31.915
|
10.284
|
46.809
|
53.191
|
17.021
|
14.894
|
46.454
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
404.099
|
601.290
|
402.148
|
421.021
|
481.053
|
516.728
|
539.422
|
463.245
|
271.262
|
280.147
|
276.339
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.810
|
-0.651
|
0.175
|
0.160
|
— | — |
-0.265
|
0.362
|
— | — | — | — | — |
No JSON data available for plots.