Hg_chrom2_TN10mRNA_4202
Organism: Heterodera glycines Gene Locus: chr2:10421151-10424559 Feature type: polypeptideProtein Sequence
Length: 620
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.806 | 1.2 | 0.938 | 0.834 | 1.102 | 1.199 | 0.653 | 1.452 | 1.075 | 1.417 | 0.562 | 1.803 | 1.12 | 0.806 | 1.415 | 1.129 | 0.899 | 0.953 | 1.489 | 0.522 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3986
|
— | — |
1.444
|
3.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.410
|
0.181
|
0.013
|
0.597
|
0.212
|
0.145
|
0.240
|
0.097
|
0.146
|
0.167
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
O15066.1 Kinesin-like protein KIF3B [Homo sapiens]
|
ADW77537.1 ran-binding protein [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.832|GO:0110165_0.832|GO:0008150_0.828|GO:0005622_0.739|GO:0009987_0.733|GO:0016020_0.698|GO:0071944_0.677|GO:0003674_0.671|GO:0005886_0.667|GO:0005737_0.640|GO:0043226_0.632|GO:0043227_0.595|GO:0043229_0.565
|
IPR001870+427-611+|IPR003877+488-610_491-608+|IPR013320+434-616+|IPR043136+433-618+|IPR044736+477-607+|IPR050618+435-608+
|
SM00449+488-610+
|
PF00622+491-608+SPRY_domain
|
— |
PTHR12864+435-608+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;52-97;218-267
|
3.000
|
4-51;98-217;268-620
|
9w9h_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.640
|
70084.860
|
6.676
|
2.000
|
25.323
|
10.645
|
48.548
|
51.452
|
13.548
|
11.774
|
49.032
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
545.017
|
163.428
|
591.926
|
408.607
|
399.560
|
636.000
|
503.929
|
1126.945
|
167.631
|
822.327
|
541.743
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.628
|
1.185
|
-0.427
|
— |
0.684
|
-0.330
|
0.724
|
-1.024
|
— | — | — | — | — |
No JSON data available for plots.