Hg_chrom2_TN10mRNA_4223
Organism: Heterodera glycines Gene Locus: chr2:10790562-10793870 Feature type: polypeptideProtein Sequence
Length: 305
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.877 | 0.839 | 1.49 | 0.0 | 1.639 | 0.757 | 0.273 | 0.82 | 0.364 | 1.241 | 1.093 | 2.507 | 0.82 | 1.261 | 1.874 | 0.749 | 0.645 | 1.242 | 1.261 | 1.157 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4007
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KKKDDVEAEVRRKKKVY
|
— | — |
15-42
|
0.999
|
— | — |
0.000
|
— | — |
0.059
|
0.929
|
0.054
|
0.234
|
0.025
|
0.033
|
0.126
|
0.007
|
0.025
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001874
|
3.000
|
1.000
|
Hsc_gene_11324.t1
|
Hsc_gene_11324.t1
|
— |
Q9HD33.2 Large ribosomal subunit protein uL29m [Homo sapiens]
|
KAI1727440.1 mitochondrial 39-S ribosomal protein l47 (MRP-L47) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005761|GO:0006412
|
GO:0005575_0.901|GO:0110165_0.897|GO:0005622_0.855|GO:0016020_0.815|GO:0043226_0.798|GO:0043229_0.788|GO:0005737_0.762|GO:0043227_0.737|GO:0043231_0.714|GO:0005739_0.561
|
IPR010729+61-239_78-168+|IPR038340+71-177+
|
— |
PF06984+78-168+Mitochondrial_39-S_ribosomal_protein_L47_(MRP-L47)
|
— |
PTHR21183+61-239+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
278-305
|
1.000
|
1-277
|
9uwh_Y
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.585
|
35770.670
|
5.814
|
-2.500
|
36.066
|
10.164
|
51.803
|
48.197
|
18.033
|
18.033
|
45.574
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
474.140
|
237.840
|
346.510
|
468.562
|
475.854
|
410.548
|
386.221
|
313.563
|
326.866
|
839.552
|
619.829
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.312
|
0.841
|
0.545
|
— |
-0.198
|
— |
-0.497
|
0.444
|
— | — | — | — | — |
No JSON data available for plots.