Hg_chrom2_TN10mRNA_4224
Organism: Heterodera glycines Gene Locus: chr2:10793987-10799441 Feature type: polypeptideProtein Sequence
Length: 519
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.031 | 0.851 | 1.191 | 0.598 | 0.706 | 0.642 | 0.642 | 1.83 | 0.771 | 1.562 | 0.555 | 0.68 | 2.087 | 0.889 | 1.73 | 1.129 | 0.948 | 1.022 | 0.741 | 0.453 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4008
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — |
44-65
|
0.962
|
20-55
|
0.995
|
— | — |
0.000
|
— | — |
0.259
|
0.473
|
0.233
|
0.418
|
0.538
|
0.336
|
0.343
|
0.020
|
0.218
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000391
|
7.000
|
1.000
|
Hsc_gene_11323.t1
|
Hsc_gene_7019.t1
|
— |
Q32NB8.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial [Homo sapiens]
|
KAH7709469.1 phospholipase D family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0008444|GO:0032049
|
GO:0005575_0.874|GO:0110165_0.872|GO:0005622_0.791|GO:0016020_0.755|GO:0005737_0.740|GO:0043226_0.692|GO:0043229_0.688|GO:0043227_0.664|GO:0043231_0.654|GO:0008150_0.589|GO:0003674_0.530|GO:0009987_0.522|GO:0005739_0.520
|
IPR001736+148-174+|IPR016270+20-519+|IPR025202+44-190+
|
SM00155+148-174+
|
PF13091+44-190+PLD-like_domain
|
— |
PTHR12586+20-519+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-519
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.756
|
58307.560
|
8.731
|
16.500
|
26.590
|
13.680
|
46.435
|
53.565
|
15.800
|
10.790
|
51.252
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
185.843
|
187.641
|
224.572
|
164.247
|
168.386
|
150.847
|
302.472
|
166.060
|
29.488
|
279.363
|
172.274
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.329
|
-0.343
|
— | — |
1.014
|
— |
1.010
|
-3.396
|
— | — | — | — |
No JSON data available for plots.