Hg_chrom2_TN10mRNA_4226
Organism: Heterodera glycines Gene Locus: chr2:10812379-10816644 Feature type: polypeptideProtein Sequence
Length: 308
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.793 | 0.755 | 0.708 | 1.232 | 0.758 | 0.833 | 0.657 | 1.948 | 0.722 | 1.58 | 0.59 | 1.146 | 1.714 | 0.874 | 2.452 | 0.928 | 0.958 | 0.984 | 0.999 | 0.477 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4010
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.926
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — |
10-30
|
0.951
|
— | — | — | — |
0.000
|
— | — |
0.434
|
0.426
|
0.137
|
0.282
|
0.085
|
0.077
|
0.068
|
0.084
|
0.181
|
0.246
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000390
|
7.000
|
1.000
|
Hsc_gene_7021.t1
|
— | — |
Q5ZHN9.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial [Gallus gallus]
|
PIO55992.1 phospholipase D domain protein, partial [Teladorsagia circumcincta]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008444|GO:0032049
|
GO:0005575_0.878|GO:0110165_0.878|GO:0005622_0.798|GO:0016020_0.776|GO:0043226_0.738|GO:0043229_0.730|GO:0005737_0.716|GO:0043227_0.696|GO:0043231_0.684|GO:0005739_0.552
|
IPR016270+6-107+
|
— | — | — |
PTHR12586+6-107+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-308
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.500
|
35442.140
|
10.816
|
29.000
|
28.247
|
12.987
|
47.078
|
52.922
|
19.805
|
8.442
|
46.429
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
salmon
|
17.376
|
9.625
|
12.683
|
12.969
|
9.031
|
10.888
|
6.809
|
8.148
|
0.000
|
49.712
|
28.407
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
-6.456
|
4.554
|
— | — | — |
No JSON data available for plots.