Hg_chrom2_TN10mRNA_4228
Organism: Heterodera glycines Gene Locus: chr2:10824191-10829155 Feature type: polypeptideProtein Sequence
Length: 937
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.129 | 0.844 | 0.97 | 0.331 | 1.494 | 0.876 | 0.584 | 0.907 | 1.115 | 0.995 | 1.051 | 1.821 | 1.601 | 1.355 | 1.459 | 0.991 | 0.7 | 0.711 | 1.067 | 0.471 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4012
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
KRKR,KREETRPAQEILIQAKRKL
|
75-95
|
0.957
|
28-68
|
0.978
|
— | — |
0.000
|
— | — |
0.285
|
0.494
|
0.214
|
0.281
|
0.581
|
0.050
|
0.105
|
0.231
|
0.228
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001878
|
3.000
|
1.000
|
Hsc_gene_12111.t1
|
Hsc_gene_246.t1;Hsc_gene_246.t2
|
— |
P90761.2 Putative stoned B-like protein [Caenorhabditis elegans]
|
KAI1719136.1 adaptor complexes medium subunit family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004222|GO:0005524|GO:0006508|GO:0006897
|
GO:0008150_0.948|GO:0005575_0.875|GO:0110165_0.875|GO:0065007_0.675|GO:0050789_0.654|GO:0009987_0.651|GO:0030054_0.571|GO:0016020_0.557|GO:0005622_0.546|GO:0045202_0.536|GO:0051179_0.513|GO:0071840_0.512|GO:0016043_0.507|GO:0006810_0.504|GO:0043226_0.504|GO:0051234_0.504
|
IPR012320+624-806_884-937+|IPR028565+1-215_7-124+|IPR036168+3-112+|IPR037219+228-396_231-388+|IPR050431+3-146+
|
— |
PF00928+7-124+Adaptor_complexes_medium_subunit_family
|
— |
PTHR10529+3-146+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
128-171;465-600;664-860;923-937
|
4.000
|
1-127;172-464;601-663;861-922
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.692
|
105968.790
|
7.217
|
6.500
|
30.203
|
10.566
|
48.453
|
51.547
|
15.902
|
14.301
|
47.492
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
82.681
|
0.538
|
0.701
|
1.523
|
1.664
|
0.000
|
0.607
|
2.626
|
0.000
|
358.856
|
205.061
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5.130
|
— |
-9.261
|
— |
-7.213
|
— | — |
No JSON data available for plots.