Hg_chrom2_TN10mRNA_4230
Organism: Heterodera glycines Gene Locus: chr2:10858132-10863605 Feature type: polypeptideProtein Sequence
Length: 1,340
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.189 | 0.868 | 0.963 | 0.283 | 1.517 | 0.67 | 0.835 | 1.381 | 0.846 | 0.928 | 0.735 | 1.097 | 1.43 | 1.55 | 1.599 | 1.109 | 0.893 | 0.531 | 1.32 | 0.461 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4014
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRKL,RKSRVGKGQTRRGRAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.432
|
0.036
|
0.025
|
0.569
|
0.042
|
0.062
|
0.011
|
0.001
|
0.100
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001878
|
3.000
|
1.000
|
Hsc_gene_12111.t1
|
Hsc_gene_246.t1;Hsc_gene_246.t2
|
— |
P90761.2 Putative stoned B-like protein [Caenorhabditis elegans]
|
KAI1719136.1 adaptor complexes medium subunit family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006897
|
GO:0008150_0.944|GO:0005575_0.850|GO:0110165_0.847|GO:0065007_0.664|GO:0050789_0.647|GO:0009987_0.644|GO:0030054_0.542|GO:0005622_0.513|GO:0045202_0.505|GO:0071840_0.503
|
IPR012320+247-429_507-652+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-235;287-495;546-746;789-928;989-1142
|
5.000
|
236-286;496-545;747-788;929-988;1143-1340
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.729
|
149082.620
|
6.326
|
-4.500
|
29.851
|
11.194
|
49.403
|
50.597
|
15.448
|
14.403
|
51.866
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
97.354
|
80.883
|
45.425
|
19.431
|
8.120
|
4.520
|
1.934
|
9.164
|
0.000
|
362.370
|
207.069
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.061
|
-2.195
|
-1.117
|
-1.292
|
— | — | — |
-2.104
|
-9.272
|
5.137
|
-4.893
|
— | — |
No JSON data available for plots.