Hg_chrom2_TN10mRNA_4231
Organism: Heterodera glycines Gene Locus: chr2:10896686-10900909 Feature type: polypeptideProtein Sequence
Length: 656
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.762 | 1.453 | 1.303 | 0.736 | 1.372 | 0.586 | 0.635 | 0.762 | 1.558 | 1.215 | 1.317 | 1.614 | 1.567 | 0.616 | 0.747 | 1.198 | 0.6 | 0.716 | 1.29 | 0.628 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4015
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.510
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.603
|
0.193
|
0.016
|
0.598
|
0.155
|
0.281
|
0.086
|
0.042
|
0.182
|
0.109
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000015
|
43.000
|
4.000
|
Hsc_gene_11236.t1;Hsc_gene_18212.t1;Hsc_gene_2973.t1;Hsc_gene_3785.t1
|
Hsc_gene_17315.t1
|
— |
Q2LE78.1 BTB/POZ domain-containing protein 6 [Xenopus laevis]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.807|GO:0110165_0.794|GO:0005622_0.738|GO:0008150_0.684|GO:0005737_0.608|GO:0043226_0.587|GO:0043229_0.582|GO:0009987_0.535
|
IPR000210+78-160_78-181_78-191+|IPR002083+350-489_352-470_355-479_371-492_514-642_515-624+|IPR008974+343-498_499-652+|IPR011333+51-217_61-181+|IPR011705+194-305_197-302+
|
SM00061+352-470_515-624+|SM00225+78-191+|SM00875+194-305+
|
PF00651+78-181+BTB/POZ_domain|PF07707+197-302+BTB_And_C-terminal_Kelch|PF22486+355-479_514-642+MATH_domain
|
— |
PTHR45774+60-321+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-55
|
1.000
|
56-656
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.514
|
74272.550
|
4.963
|
-15.000
|
29.268
|
10.976
|
49.848
|
50.152
|
13.872
|
15.396
|
47.409
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
magenta
|
61.486
|
29.816
|
14.504
|
22.496
|
23.369
|
27.739
|
30.581
|
12.989
|
1.028
|
207.672
|
119.111
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.277
|
-0.544
|
0.748
|
— | — | — |
-1.202
|
1.372
|
— |
4.354
|
— | — | — |
No JSON data available for plots.