Hg_chrom2_TN10mRNA_4234
Organism: Heterodera glycines Gene Locus: chr2:11067501-11069344 Feature type: polypeptideProtein Sequence
Length: 324
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.041 | 1.148 | 0.673 | 0.532 | 0.874 | 1.029 | 1.764 | 0.926 | 1.166 | 1.126 | 0.655 | 1.634 | 1.286 | 0.712 | 1.197 | 1.058 | 0.658 | 0.935 | 0.475 | 0.545 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4018
|
— | — |
1.889
|
2.000
|
2.000
|
1.000
|
2.000
|
3.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
SRGRPNNDGGGTSGGRGGAGQKRGGGRGGGRGGGKGNGRGGGSGGRGGR
|
— | — | — | — | — | — |
0.003
|
— | — |
0.401
|
0.105
|
0.036
|
0.442
|
0.589
|
0.167
|
0.267
|
0.011
|
0.176
|
0.157
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001056
|
4.000
|
1.000
|
Hsc_gene_13472.t1
|
— | — |
O61998.2 Heat shock protein 90 [Brugia pahangi]
|
ACR57216.1 Hsp90 [Heterodera glycines]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
|
GO:0005575_0.837|GO:0110165_0.837|GO:0008150_0.733|GO:0005622_0.667|GO:0009987_0.661|GO:0003674_0.646|GO:0005737_0.630|GO:0016020_0.615|GO:0043226_0.566|GO:0005488_0.547|GO:0071944_0.538|GO:0050896_0.536|GO:0043229_0.510
|
IPR001404+62-224+|IPR019805+81-90+|IPR020575+61-81_73-222_82-104+|IPR036890+59-231_66-228+
|
— | — |
G3DSA:3.30.565.10:FF:000357+59-230+Heat_shock_protein_HSP_90-beta
|
PTHR11528+62-224+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
246-324
|
1.000
|
1-245
|
4gqt_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.941
|
34256.890
|
8.616
|
7.000
|
20.988
|
8.951
|
41.358
|
58.642
|
12.037
|
8.951
|
55.247
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
109.911
|
1.682
|
4.308
|
2.366
|
1.564
|
1.767
|
0.205
|
1.399
|
1.382
|
474.841
|
271.930
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.