Hg_chrom2_TN10mRNA_4240
Organism: Heterodera glycines Gene Locus: chr2:11299492-11300923 Feature type: polypeptideProtein Sequence
Length: 397
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.967 | 0.937 | 0.458 | 0.955 | 1.385 | 1.486 | 1.08 | 1.134 | 0.728 | 1.191 | 0.878 | 1.037 | 1.399 | 0.823 | 1.388 | 0.792 | 0.826 | 0.687 | 1.55 | 1.185 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4023
|
— | — |
1.333
|
1.000
|
3.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.790
|
0.204
|
0.008
|
0.361
|
0.097
|
0.016
|
0.069
|
0.005
|
0.079
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000756
|
2.000
|
4.000
|
Hsc_gene_18030.t1;Hsc_gene_18927.t1;Hsc_gene_22774.t1;Hsc_gene_801.t1
|
Hsc_gene_18927.t1;Hsc_gene_22773.t1;Hsc_gene_22774.t1
|
— | — |
KAJ8672163.1 hypothetical protein QAD02_003422 [Eretmocerus hayati]
|
MCK5116963
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.942|GO:0003674_0.884|GO:0009987_0.878|GO:0005575_0.774|GO:0110165_0.767|GO:0003824_0.738|GO:0071840_0.735|GO:0016043_0.729|GO:0005622_0.702|GO:0140096_0.679|GO:0006325_0.676|GO:0006338_0.675|GO:0032451_0.650|GO:0032452_0.650|GO:0032454_0.650|GO:0140457_0.650|GO:0140993_0.650|GO:0141052_0.650|GO:0043226_0.636|GO:0043229_0.626|GO:0065007_0.567|GO:0050789_0.549|GO:0005488_0.538|GO:0050794_0.529|GO:0008152_0.526|GO:0043228_0.501|GO:0043232_0.501
|
IPR003347+165-318_199-298+
|
SM00558+165-318+
|
PF02373+199-298+JmjC_domain,_hydroxylase
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-397
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.813
|
44902.960
|
8.522
|
11.500
|
25.693
|
13.350
|
46.096
|
53.904
|
14.861
|
10.831
|
46.096
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
327.222
|
0.000
|
0.286
|
2.375
|
0.888
|
0.000
|
0.000
|
0.280
|
4.820
|
1426.544
|
817.234
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
5.676
|
3.159
|
— | — | — | — | — |
-6.491
|
— |
-8.697
|
— | — |
No JSON data available for plots.