Hg_chrom2_TN10mRNA_4244
Organism: Heterodera glycines Gene Locus: chr2:11310351-11314306 Feature type: polypeptideProtein Sequence
Length: 775
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.705 | 1.53 | 1.056 | 1.335 | 1.011 | 0.993 | 0.768 | 0.774 | 1.577 | 0.889 | 1.31 | 1.063 | 1.649 | 0.943 | 0.816 | 1.014 | 0.931 | 0.626 | 0.993 | 0.759 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4025
|
— | — |
1.222
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
FKRR,KTKGKRRRKRQAKPN
|
— | — | — | — |
1-19
|
0.997
|
1.000
|
0.000
|
0.000
|
0.199
|
0.236
|
0.045
|
0.196
|
0.207
|
0.049
|
0.149
|
0.017
|
0.207
|
0.823
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000243
|
9.000
|
1.000
|
Hsc_gene_11615.t1
|
— | — |
Q21180.1 Zinc metalloproteinase nas-16 [Caenorhabditis elegans]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
-0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.954|GO:0032501_0.780|GO:0032502_0.581|GO:0048856_0.581|GO:0007275_0.549|GO:0018996_0.519|GO:0042303_0.519
|
IPR001506+580-728_583-601_676-691_714-727+|IPR006026+550-681+|IPR024079+493-730+
|
SM00235+550-681+
|
PF01400+580-728+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+499-758+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-775
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.818
|
87119.250
|
7.863
|
12.000
|
26.065
|
11.355
|
49.290
|
50.710
|
14.194
|
11.871
|
50.581
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
144.097
|
0.157
|
2.130
|
1.241
|
10.827
|
59.193
|
0.607
|
92.350
|
0.000
|
567.984
|
324.562
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
3.085
|
2.470
|
-6.598
|
— |
-7.104
|
— | — | — | — | — |