Hg_chrom2_TN10mRNA_4248
Organism: Heterodera glycines Gene Locus: chr2:11424892-11428213 Feature type: polypeptideProtein Sequence
Length: 605
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.884 | 1.499 | 1.202 | 0.57 | 1.185 | 1.822 | 0.59 | 1.322 | 0.845 | 0.849 | 0.701 | 1.458 | 0.781 | 1.176 | 2.024 | 1.063 | 0.813 | 0.651 | 0.636 | 0.681 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4028
|
— | — |
1.333
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRSSDDPNSRRERGR,KKRPDQPHQVARRRRQP,NSRRERGRGERADRDRPRERERDRGTNRSRSPRGRNGRGR
|
15-39
|
0.931
|
— | — | — | — |
0.000
|
— | — |
0.670
|
0.113
|
0.012
|
0.380
|
0.054
|
0.023
|
0.025
|
0.011
|
0.060
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000792
|
3.000
|
3.000
|
Hsc_gene_18834.t1;Hsc_gene_18855.t1;Hsc_gene_18855.t2
|
— | — | — |
KAF7636077.1 RRM domain-containing protein [Meloidogyne graminicola]
|
WP_322198893
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676
|
— |
IPR012677+118-207+|IPR035979+117-202+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-119;170-358;412-496
|
3.000
|
120-169;359-411;497-605
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.819
|
69010.730
|
8.330
|
13.000
|
30.909
|
8.595
|
56.860
|
43.140
|
17.190
|
13.719
|
50.083
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
53.925
|
120.868
|
56.345
|
55.087
|
35.740
|
34.995
|
105.347
|
102.453
|
51.673
|
5.604
|
25.348
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.335
|
-1.271
|
— |
-0.656
|
— |
1.600
|
1.446
|
— | — | — | — | — | — |
No JSON data available for plots.