Hg_chrom2_TN10mRNA_4251
Organism: Heterodera glycines Gene Locus: chr2:11588101-11595455 Feature type: polypeptideProtein Sequence
Length: 217
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.125 | 0.75 | 0.587 | 0.477 | 0.998 | 1.772 | 0.987 | 0.691 | 0.922 | 1.059 | 0.908 | 1.355 | 1.024 | 0.709 | 1.881 | 1.317 | 1.058 | 0.768 | 0.354 | 0.542 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4031
|
— | — |
1.444
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RPKKRRS,RRKYVDRAGRRRRAV
|
51-83
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.873
|
0.248
|
0.013
|
0.217
|
0.017
|
0.029
|
0.061
|
0.005
|
0.015
|
0.204
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003248
|
2.000
|
1.000
|
Hsc_gene_9237.t1
|
Hsc_gene_9237.t1
|
— |
A0JMV4.1 RNA-binding protein 5-A [Xenopus laevis]
|
KAI1721744.1 g-patch domain-containing protein [Ditylenchus destructor]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676
|
GO:0005575_0.793|GO:0110165_0.779|GO:0005622_0.723|GO:0008150_0.643|GO:0043226_0.630|GO:0043229_0.626|GO:0016020_0.614|GO:0009987_0.588|GO:0043227_0.549|GO:0043231_0.523
|
IPR000467+128-174_130-176_131-173+|IPR053027+15-179+
|
SM00443+128-174+
|
PF01585+131-173+G-patch_domain
|
— |
PTHR23106+15-179+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
151-217
|
1.000
|
1-150
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
23892.130
|
10.675
|
14.500
|
25.806
|
7.373
|
51.613
|
48.387
|
16.590
|
9.217
|
50.230
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
239.752
|
94.860
|
52.717
|
61.125
|
57.503
|
47.835
|
64.697
|
55.370
|
20.778
|
870.542
|
506.357
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.076
|
-0.771
|
0.321
|
— | — |
0.445
|
— |
0.366
|
-5.511
|
— |
-3.615
|
— | — |
No JSON data available for plots.