Hg_chrom2_TN10mRNA_4264
Organism: Heterodera glycines Gene Locus: chr2:12261286-12264157 Feature type: polypeptideProtein Sequence
Length: 427
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.871 | 1.362 | 0.809 | 0.646 | 1.171 | 1.141 | 0.474 | 1.405 | 1.561 | 1.298 | 0.923 | 1.378 | 1.106 | 0.901 | 1.29 | 0.97 | 0.96 | 0.674 | 1.441 | 0.895 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4044
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.301
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKLHEDALSHASYRGRLR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.356
|
0.287
|
0.021
|
0.551
|
0.096
|
0.075
|
0.177
|
0.013
|
0.300
|
0.353
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000763
|
5.000
|
1.000
|
Hsc_gene_15915.t1
|
— | — | — |
KAI3422304.1 Neurotransmitter-gated ion-channel transmembrane region [Globodera pallida]
|
MDD4135786
|
0.370
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.949|GO:0005575_0.905|GO:0110165_0.902|GO:0003674_0.846|GO:0016020_0.826|GO:0050896_0.802|GO:0071944_0.775|GO:0005886_0.750|GO:0006950_0.724|GO:0003824_0.715|GO:0009987_0.690|GO:0016740_0.683|GO:0016772_0.660|GO:0016779_0.654|GO:0070566_0.650|GO:0070733_0.650|GO:0005622_0.642|GO:0043226_0.598|GO:0043229_0.587|GO:0005737_0.581|GO:0005488_0.569|GO:0051716_0.564|GO:0008152_0.557|GO:0044238_0.547|GO:0005515_0.542|GO:0043227_0.541|GO:0043170_0.538|GO:0043231_0.528|GO:0019538_0.515
|
IPR003812+56-156_56-195+|IPR036597+8-207_53-197+|IPR040198+40-200+
|
— |
PF02661+56-156+Fic/DOC_family
|
— |
PTHR13504+40-200+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-45
|
1.000
|
46-427
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.724
|
48968.030
|
8.290
|
10.000
|
26.698
|
11.710
|
49.649
|
50.351
|
15.222
|
11.475
|
45.433
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
21.167
|
17.819
|
18.192
|
10.878
|
30.784
|
17.209
|
21.495
|
18.097
|
0.000
|
42.179
|
24.102
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.848
|
— |
1.470
|
-0.826
|
— | — | — |
-6.145
|
4.300
|
— | — | — |
No JSON data available for plots.