Hg_chrom2_TN10mRNA_4273
Organism: Heterodera glycines Gene Locus: chr2:12504716-12506667 Feature type: polypeptideProtein Sequence
Length: 326
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.535 | 1.284 | 1.004 | 0.74 | 0.818 | 1.258 | 0.657 | 2.147 | 1.159 | 1.451 | 1.115 | 1.083 | 1.875 | 1.357 | 0.438 | 0.789 | 0.754 | 0.93 | 1.18 | 1.083 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4052
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.716
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KKVSKKCTKKTRG
|
— | — | — | — |
1-18
|
0.988
|
1.000
|
0.000
|
0.000
|
0.357
|
0.283
|
0.038
|
0.434
|
0.279
|
0.099
|
0.092
|
0.018
|
0.107
|
0.521
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000793
|
5.000
|
1.000
|
Hsc_gene_5170.t1
|
— | — |
Q92485.2 Acid sphingomyelinase-like phosphodiesterase 3b [Homo sapiens]
|
KAI1714947.1 calcineurin-like phosphoesterase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0005575_0.866|GO:0110165_0.866|GO:0008150_0.818|GO:0009987_0.745|GO:0003674_0.654|GO:0008152_0.605|GO:0044237_0.576|GO:0003824_0.546|GO:0016020_0.537|GO:0065007_0.526|GO:0050789_0.512|GO:0050896_0.511
|
IPR004843+25-264+|IPR029052+24-271_56-297+
|
— |
PF00149+25-264+Calcineurin-like_phosphoesterase
|
— |
PTHR10340+20-272+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-326
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.684
|
37262.800
|
6.990
|
4.000
|
24.233
|
16.258
|
44.785
|
55.215
|
13.804
|
10.429
|
46.626
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
61.599
|
21.304
|
41.044
|
28.961
|
26.890
|
38.308
|
55.679
|
52.335
|
0.255
|
170.109
|
97.314
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
— | — | — |
0.526
|
0.548
|
— | — | — |
5.235
|
— | — | — |