Hg_chrom2_TN10mRNA_4274
Organism: Heterodera glycines Gene Locus: chr2:12517390-12520558 Feature type: polypeptideProtein Sequence
Length: 289
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.523 | 1.046 | 0.818 | 0.239 | 1.038 | 1.242 | 0.577 | 1.211 | 1.23 | 1.59 | 1.468 | 1.221 | 2.115 | 1.264 | 0.565 | 0.494 | 0.681 | 1.258 | 1.331 | 1.119 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4053
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.829
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
PKKVKKCTKKTRGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.238
|
0.204
|
0.026
|
0.205
|
0.758
|
0.404
|
0.498
|
0.106
|
0.237
|
0.094
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000793
|
5.000
|
1.000
|
Hsc_gene_5170.t1
|
— | — |
Q92485.2 Acid sphingomyelinase-like phosphodiesterase 3b [Homo sapiens]
|
KAI1714947.1 calcineurin-like phosphoesterase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0005575_0.900|GO:0110165_0.900|GO:0008150_0.820|GO:0009987_0.782|GO:0003674_0.639|GO:0016020_0.631|GO:0008152_0.580|GO:0044237_0.566|GO:0065007_0.514|GO:0003824_0.512
|
IPR004843+7-198+|IPR029052+3-203_6-224+
|
— |
PF00149+7-198+Calcineurin-like_phosphoesterase
|
— |
PTHR10340+99-206+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-289
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.711
|
33560.270
|
9.288
|
8.500
|
25.606
|
15.571
|
42.561
|
57.439
|
14.879
|
10.727
|
41.522
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
25.040
|
15.636
|
24.192
|
14.998
|
16.173
|
37.287
|
19.068
|
34.565
|
21.656
|
32.589
|
27.903
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.578
|
— |
1.223
|
-0.959
|
— |
-0.717
|
— | — | — | — | — |
No JSON data available for plots.