Hg_chrom2_TN10mRNA_4276
Organism: Heterodera glycines Gene Locus: chr2:12573680-12577036 Feature type: polypeptideProtein Sequence
Length: 466
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.798 | 0.998 | 1.21 | 0.74 | 1.395 | 0.99 | 0.715 | 0.966 | 1.24 | 0.986 | 1.203 | 2.146 | 1.311 | 0.908 | 1.226 | 0.858 | 0.774 | 0.91 | 0.66 | 0.694 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4055
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKKK,RRLRI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.383
|
0.336
|
0.065
|
0.739
|
0.263
|
0.061
|
0.093
|
0.012
|
0.089
|
0.144
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001161
|
4.000
|
1.000
|
Hsc_gene_10765.t1
|
Hsc_gene_10765.t1
|
— |
Q18678.1 Probable serine--tRNA ligase, cytoplasmic [Caenorhabditis elegans]
|
KAI3413677.1 putative serine--tRNA ligase, cytoplasmic [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0004812|GO:0004828|GO:0005524|GO:0006418|GO:0006434
|
GO:0005575_0.833|GO:0110165_0.825|GO:0005622_0.750|GO:0005737_0.679|GO:0016020_0.634|GO:0043226_0.618|GO:0043229_0.598|GO:0008150_0.568|GO:0043227_0.532|GO:0043231_0.516|GO:0009987_0.509
|
IPR002314+242-424+|IPR002317+5-449_14-454_62-440_284-296_296-309_338-351_355-371_373-389+|IPR006195+181-433+|IPR033729+130-440+|IPR042103+13-115+|IPR045864+116-456_141-441+
|
— |
PF00587+242-424+tRNA_synthetase_class_II_core_domain_(G,_H,_P,_S_and_T)
|
G3DSA:3.30.930.10:FF:000027+116-456+Serine--tRNA_ligase,_cytoplasmic
|
PTHR11778+14-454+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22;464-466
|
1.000
|
23-463
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.580
|
52835.310
|
6.425
|
-0.500
|
30.901
|
9.871
|
49.785
|
50.215
|
15.880
|
15.021
|
47.425
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
199.612
|
52.421
|
37.655
|
35.101
|
34.078
|
25.273
|
132.600
|
127.427
|
70.547
|
653.682
|
403.767
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.705
|
-0.716
|
— | — | — |
2.404
|
2.230
|
— | — | — | — | — | — |
No JSON data available for plots.