Hg_chrom2_TN10mRNA_4278
Organism: Heterodera glycines Gene Locus: chr2:12639237-12641681 Feature type: polypeptideProtein Sequence
Length: 383
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.88 | 2.186 | 0.902 | 0.27 | 1.436 | 0.87 | 0.746 | 1.305 | 1.276 | 0.917 | 1.029 | 1.075 | 1.16 | 0.803 | 1.119 | 1.231 | 0.599 | 0.989 | 0.803 | 0.461 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4057
|
— | — |
1.556
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
4.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKILMANDKFAQVMKGLKK,KNQRKRANRSDRKKSGGRV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.923
|
0.063
|
0.013
|
0.314
|
0.012
|
0.020
|
0.026
|
0.053
|
0.031
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007277
|
1.000
|
1.000
|
Hsc_gene_2269.t1
|
Hsc_gene_2269.t1
|
— |
P08436.2 Histone H4 [Volvox carteri]
|
XP_061187191.1 histone H4-like [Saccostrea echinata]
|
No
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.827|GO:0110165_0.827|GO:0005622_0.739|GO:0016020_0.713|GO:0043226_0.702|GO:0043229_0.691|GO:0043227_0.663|GO:0043231_0.663|GO:0005634_0.542|GO:0008150_0.525
|
IPR000953+257-304+|IPR001951+127-146_147-167+|IPR009072+132-172+|IPR016197+240-294+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-241
|
1.000
|
242-383
|
9eh1_f
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.804
|
42712.740
|
6.509
|
0.000
|
28.460
|
9.399
|
53.525
|
46.475
|
14.883
|
13.577
|
51.958
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
79.778
|
0.931
|
3.070
|
1.625
|
3.417
|
13.332
|
1.224
|
7.178
|
7.031
|
332.213
|
192.849
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
1.972
|
-3.437
|
— |
-2.410
|
-5.665
|
— |
-6.443
|
— | — |
No JSON data available for plots.