Hg_chrom2_TN10mRNA_4289
Organism: Heterodera glycines Gene Locus: chr2:13068569-13070046 Feature type: polypeptideProtein Sequence
Length: 363
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.801 | 0.705 | 0.952 | 0.855 | 1.056 | 1.413 | 0.82 | 1.791 | 1.408 | 1.303 | 0.877 | 1.62 | 1.837 | 0.742 | 1.406 | 1.063 | 0.677 | 0.668 | 1.483 | 0.081 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4068
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRVK,RRFGARREQFRKRDM
|
— | — | — | — | — | — |
0.000
|
— | — |
0.777
|
0.096
|
0.069
|
0.378
|
0.073
|
0.054
|
0.072
|
0.073
|
0.113
|
0.168
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000277
|
7.000
|
2.000
|
Hsc_gene_19559.t1;Hsc_gene_22469.t1
|
Hsc_gene_1151.t1;Hsc_gene_1151.t2;Hsc_gene_12064.t1;Hsc_gene_13038.t1;Hsc_gene_19559.t1;Hsc_gene_22469.t1;Hsc_gene_25723.t1;Hsc_gene_5850.t1;Hsc_gene_787.t1;Hsc_gene_787.t2;Hsc_gene_865.t1;Hsc_gene_9622.t1
|
— | — |
KAI1707339.1 hypothetical protein DdX_12435 [Ditylenchus destructor]
|
MBI5501562
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR009689+3-58+
|
— |
PF06918+3-58+Protein_of_unknown_function_(DUF1280)
|
— |
PTHR31424+1-182+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-363
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.731
|
41190.330
|
8.261
|
10.500
|
27.824
|
12.397
|
47.934
|
52.066
|
16.253
|
11.570
|
44.353
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
yellow
|
502.988
|
151.882
|
304.933
|
263.614
|
225.220
|
197.108
|
174.910
|
399.089
|
1256.144
|
614.682
|
889.594
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.776
|
0.658
|
— |
-0.257
|
— | — |
0.910
|
-1.046
|
— |
-2.085
|
— | — | — |
No JSON data available for plots.