Hg_chrom2_TN10mRNA_4292
Organism: Heterodera glycines Gene Locus: chr2:13285986-13293874 Feature type: polypeptideProtein Sequence
Length: 514
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.747 | 1.538 | 0.601 | 0.47 | 1.329 | 0.748 | 0.787 | 0.973 | 1.643 | 1.288 | 0.56 | 1.259 | 1.621 | 0.711 | 1.668 | 0.889 | 0.797 | 0.766 | 1.796 | 1.144 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4071
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.229
|
0.186
|
0.024
|
0.610
|
0.153
|
0.245
|
0.365
|
0.053
|
0.278
|
0.230
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001088
|
4.000
|
1.000
|
Hsc_gene_12069.t1
|
— | — |
P97571.1 Calpain-1 catalytic subunit [Rattus norvegicus]
|
KAK5979613.1 Calpain family cysteine protease [Trichostrongylus colubriformis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004198|GO:0006508
|
GO:0008150_0.795|GO:0005575_0.737|GO:0110165_0.733|GO:0003674_0.715|GO:0009987_0.672|GO:0005622_0.608|GO:0003824_0.559|GO:0005737_0.537|GO:0008152_0.535|GO:0016020_0.531
|
IPR001300+1-214_13-206_16-203+|IPR022682+230-358+|IPR022683+224-366+|IPR022684+20-43_45-72_182-203_240-257_332-360+|IPR036213+228-364+|IPR038765+17-207+|IPR050420+17-366+
|
SM00230+1-214+|SM00720+224-366+
|
PF00648+16-203+Calpain_family_cysteine_protease|PF01067+230-358+Calpain_large_subunit,_domain_III
|
— |
PTHR10183+17-366+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5
|
1.000
|
6-514
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
59381.830
|
8.146
|
8.000
|
25.097
|
14.008
|
45.720
|
54.280
|
13.813
|
11.284
|
44.163
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
blue
|
403.899
|
15.079
|
24.913
|
20.313
|
11.307
|
346.215
|
41.607
|
15.632
|
203.375
|
1436.376
|
907.947
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-0.873
|
4.943
|
-3.046
|
-4.573
|
1.555
|
— | — |
-6.343
|
— | — |
No JSON data available for plots.