Hg_chrom2_TN10mRNA_4298
Organism: Heterodera glycines Gene Locus: chr2:13420902-13426171 Feature type: polypeptideProtein Sequence
Length: 493
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.802 | 1.604 | 1.106 | 0.42 | 2.028 | 1.092 | 0.266 | 0.406 | 1.082 | 1.124 | 2.397 | 1.312 | 1.296 | 0.546 | 0.787 | 1.072 | 0.632 | 0.369 | 1.092 | 0.477 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4077
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
DKKVEKLKIWKKKNKN,KKSLEFPIDDTMNRYRKA,KKLDEKVVKLWNDKKVEK,RRSQTEEEMDKEKSKGKKA,RKTKWNCPEKANDKQRKRP
|
— | — | — | — |
1-20
|
0.852
|
0.909
|
0.000
|
0.000
|
0.292
|
0.228
|
0.021
|
0.672
|
0.172
|
0.144
|
0.258
|
0.012
|
0.370
|
0.179
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001766
|
2.000
|
2.000
|
Hsc_gene_7025.t1;Hsc_gene_7025.t2
|
— | — | — | — |
WP_165414180
|
0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-218;492-493
|
1.000
|
219-491
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
57449.220
|
8.950
|
9.000
|
38.742
|
8.519
|
61.258
|
38.742
|
20.487
|
18.256
|
39.959
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
891.947
|
12.551
|
145.785
|
278.647
|
104.271
|
11.248
|
12.643
|
13.563
|
2889.139
|
1518.400
|
2105.859
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.309
|
4.335
|
1.044
|
-1.447
|
-3.199
|
— | — | — | — |
-3.228
|
-3.751
|
— | — |