Hg_chrom2_TN10mRNA_4304
Organism: Heterodera glycines Gene Locus: chr2:13546829-13548622 Feature type: polypeptideProtein Sequence
Length: 125
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.209 | 0.744 | 1.018 | 0.552 | 1.2 | 1.231 | 0.952 | 2.0 | 1.244 | 0.973 | 1.091 | 1.882 | 0.222 | 0.615 | 0.98 | 0.8 | 0.918 | 1.212 | 0.615 | 0.941 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4083
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.912
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.496
|
0.249
|
0.021
|
0.519
|
0.140
|
0.168
|
0.083
|
0.022
|
0.412
|
0.265
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001885
|
3.000
|
1.000
|
Hsc_gene_11603.t1
|
Hsc_gene_11603.t1;Hsc_gene_16462.t1;Hsc_gene_16466.t1;Hsc_gene_16466.t2;Hsc_gene_3526.t1;Hsc_gene_7028.t1
|
— |
Q09506.1 Tax1-binding protein 3 homolog [Caenorhabditis elegans]
|
XP_013197187.1 tax1-binding protein 3 homolog [Amyelois transitella]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.894|GO:0110165_0.888|GO:0008150_0.760|GO:0016020_0.723|GO:0005622_0.700|GO:0009987_0.670|GO:0005737_0.612|GO:0043226_0.568|GO:0071944_0.548|GO:0003674_0.540|GO:0005886_0.527|GO:0043229_0.521
|
IPR001478+18-104_35-112_36-116_56-112+|IPR036034+10-115_33-118+|IPR050614+39-116+
|
SM00228+36-116+
|
PF00595+35-112+PDZ_domain
|
— |
PTHR23119+39-116+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-125
|
2vz5_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.561
|
13706.580
|
6.968
|
1.500
|
28.800
|
8.800
|
48.000
|
52.000
|
16.000
|
12.800
|
51.200
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
198.747
|
72.848
|
206.912
|
84.187
|
64.640
|
105.019
|
175.768
|
346.397
|
143.329
|
366.107
|
270.631
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.276
|
— |
-1.188
|
-0.415
|
0.716
|
0.755
|
1.621
|
-0.836
|
— | — | — | — |
8.876
|
No JSON data available for plots.