Hg_chrom2_TN10mRNA_4308
Organism: Heterodera glycines Gene Locus: chr2:13562108-13563627 Feature type: polypeptideProtein Sequence
Length: 177
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.788 | 1.182 | 0.719 | 0.974 | 0.659 | 1.159 | 0.74 | 0.847 | 0.879 | 1.603 | 0.856 | 2.659 | 1.569 | 1.086 | 0.461 | 1.049 | 0.463 | 1.37 | 0.435 | 1.662 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4087
|
— | — |
1.889
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.548
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.840
|
0.174
|
0.010
|
0.401
|
0.042
|
0.094
|
0.038
|
0.005
|
0.155
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003440
|
1.000
|
2.000
|
Hsc_gene_16238.t2;Hsc_gene_4117.t1
|
— | — | — |
CAK5046952.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.630|GO:0110165_0.630|GO:0008150_0.580|GO:0016020_0.566|GO:0005622_0.558|GO:0005737_0.547|GO:0043226_0.501
|
IPR000536+1-163_10-130+|IPR035500+1-156_1-169+
|
— |
PF00104+10-130+Ligand-binding_domain_of_nuclear_hormone_receptor
|
— |
PTHR45886+4-152+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-177
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
19796.120
|
7.161
|
1.500
|
17.514
|
13.559
|
37.288
|
62.712
|
9.605
|
7.910
|
49.718
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
174.596
|
2.443
|
18.653
|
26.480
|
30.728
|
24.890
|
29.381
|
148.508
|
382.100
|
371.878
|
376.259
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.700
|
3.300
|
0.615
|
— | — | — |
2.453
|
-2.193
|
— |
-3.722
|
— | — | — |
No JSON data available for plots.