SCN Proteipedia

Hg_chrom2_TN10mRNA_4311

Organism: Heterodera glycines Gene Locus: chr2:13586707-13589811 Feature type: polypeptide

Protein Sequence

Length: 467

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.071	0.996	0.623	0.96	0.857	0.714	0.484	0.964	1.475	1.563	0.552	1.889	1.844	0.947	1.18	1.101	1.229	0.844	0.824	0.63	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_4090	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.885

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	—	58-78	0.860	—	—	—	—	0.000	—	—	0.100	0.073	0.006	0.175	0.158	0.161	0.125	0.003	0.829	0.148

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001886	3.000	1.000	Hsc_gene_10279.t3	Hsc_gene_10279.t1;Hsc_gene_11612.t1	—	Q59E83.1 Neuropeptide receptor 22 [Caenorhabditis elegans]	KAI1705942.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004930\|GO:0007186\|GO:0016020	GO:0008150_0.914\|GO:0009987_0.886\|GO:0065007_0.831\|GO:0050789_0.805\|GO:0005575_0.795\|GO:0110165_0.795\|GO:0050896_0.787\|GO:0050794_0.777\|GO:0051716_0.742\|GO:0007154_0.735\|GO:0023052_0.734\|GO:0003674_0.723\|GO:0071944_0.723\|GO:0005886_0.722\|GO:0016020_0.722\|GO:0007165_0.681\|GO:0060089_0.627\|GO:0038023_0.621\|GO:0007186_0.613\|GO:0004888_0.605\|GO:0005488_0.575\|GO:0032501_0.525\|GO:0004930_0.522	IPR000276+45-69_60-449_78-99_153-174_389-413_431-457+\|IPR017452+60-449+	—	PF00001+60-449+7_transmembrane_receptor_(rhodopsin_family)	—	PTHR24243+33-467+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	230-373	2.000	1-229;374-467	7f61_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.709	52213.810	8.042	8.500	19.914	11.777	42.184	57.816	11.349	8.565	49.465

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	43.561	22.686	54.861	28.319	9.341	30.843	7.117	21.776	41.203	94.074	71.415

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.042	—	-0.844	-1.633	1.739	-2.105	-0.605	-1.471	—	—	—	—	—

No JSON data available for plots.

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