Hg_chrom2_TN10mRNA_4313
Organism: Heterodera glycines Gene Locus: chr2:13598759-13604332 Feature type: polypeptideProtein Sequence
Length: 1,118
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.666 | 1.394 | 0.992 | 1.511 | 1.222 | 0.94 | 0.777 | 0.984 | 1.451 | 0.846 | 1.423 | 0.789 | 1.416 | 0.998 | 0.931 | 0.894 | 0.982 | 0.529 | 1.238 | 0.947 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4092
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
FKRR,RKDKRAR,KKKWRRKR,RREGETKSFWGYWKDKSK,KKCELNGNGMIRMGKKAKN,RKIRTSTTTRATPPKTKLK,KKYEIGQLPKNYDEKMEKK,KKDDSCACHWQIKPKDGKK
|
— | — | — | — |
1-19
|
0.995
|
1.000
|
0.000
|
0.000
|
0.271
|
0.132
|
0.042
|
0.197
|
0.120
|
0.085
|
0.156
|
0.013
|
0.278
|
0.797
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000243
|
9.000
|
1.000
|
Hsc_gene_11615.t1
|
Hsc_gene_11616.t1;Hsc_gene_11669.t1;Hsc_gene_11669.t2
|
— |
Q93243.2 Zinc metalloproteinase nas-37 [Caenorhabditis elegans]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.809|GO:0032501_0.636|GO:0005575_0.553|GO:0110165_0.551|GO:0003674_0.506
|
IPR000742+827-838+|IPR001506+605-803_635-803_640-658_697-715_749-764_789-802+|IPR006026+611-754+|IPR024079+558-805+
|
SM00235+611-754+
|
PF01400+635-803+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+571-905+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1118
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.810
|
126866.160
|
8.029
|
24.000
|
28.712
|
11.896
|
50.626
|
49.374
|
15.921
|
12.791
|
49.016
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
121.288
|
0.780
|
7.639
|
27.921
|
11.009
|
178.244
|
9.116
|
354.746
|
66.817
|
259.475
|
176.907
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.082
|
5.046
|
1.974
|
-1.380
|
4.038
|
-4.280
|
0.888
|
-5.140
|
— | — |
-4.271
|
— | — |