Hg_chrom2_TN10mRNA_4314
Organism: Heterodera glycines Gene Locus: chr2:13605600-13606676 Feature type: polypeptideProtein Sequence
Length: 70
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.827 | 0.997 | 0.0 | 1.478 | 0.238 | 0.733 | 0.85 | 2.143 | 0.635 | 1.544 | 0.649 | 2.521 | 1.984 | 0.824 | 0.583 | 0.816 | 1.171 | 1.515 | 0.0 | 0.0 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4093
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
3.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular|mitochondrion
|
— | — | — | — | — | — |
1-29
|
0.867
|
1.000
|
0.000
|
0.000
|
0.317
|
0.850
|
0.094
|
0.218
|
0.170
|
0.057
|
0.036
|
0.091
|
0.342
|
0.754
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000295
|
1.000
|
8.000
|
Hsc_gene_11632.t1;Hsc_gene_11635.t1;Hsc_gene_11649.t1;Hsc_gene_11652.t1;Hsc_gene_13583.t1;Hsc_gene_15587.t1;Hsc_gene_15589.t1;Hsc_gene_22956.t1
|
— | — | — | — |
WP_343529314
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-70
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.688
|
7330.740
|
9.657
|
5.500
|
12.857
|
11.429
|
32.857
|
67.143
|
11.429
|
1.429
|
58.571
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
2570.874
|
1.820
|
1741.854
|
2284.817
|
318.827
|
10.358
|
21.512
|
122.738
|
8319.508
|
3319.722
|
5462.488
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9.661
|
10.144
|
0.499
|
-2.873
|
-4.933
|
1.067
|
3.476
|
-2.375
|
— |
-1.730
|
-3.228
|
— | — |