Hg_chrom2_TN10mRNA_4318
Organism: Heterodera glycines Gene Locus: chr2:13628320-13635305 Feature type: polypeptideProtein Sequence
Length: 1,078
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.658 | 1.359 | 1.147 | 1.503 | 1.175 | 0.975 | 0.751 | 0.881 | 1.464 | 0.865 | 1.476 | 0.982 | 1.52 | 0.928 | 0.871 | 0.835 | 0.867 | 0.632 | 1.213 | 0.9 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4097
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
FKRR,RKDKRAR,KTKGKRRRKRQAKP,RREGETKSFWGYWKDKSK
|
— | — | — | — |
1-19
|
0.997
|
1.000
|
0.000
|
0.000
|
0.257
|
0.201
|
0.027
|
0.171
|
0.151
|
0.076
|
0.147
|
0.014
|
0.225
|
0.759
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000243
|
9.000
|
1.000
|
Hsc_gene_11615.t1
|
Hsc_gene_11616.t2;Hsc_gene_11669.t1;Hsc_gene_11669.t2
|
— |
Q21180.1 Zinc metalloproteinase nas-16 [Caenorhabditis elegans]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
-0.420
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.798|GO:0032501_0.625|GO:0005575_0.525|GO:0110165_0.524|GO:0003674_0.503
|
IPR000742+787-798+|IPR001506+572-767_581-762_606-624_661-679_711-726_749-762+|IPR006026+577-716+|IPR024079+522-765+
|
SM00235+577-716+
|
PF01400+581-762+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+524-863+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1078
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.753
|
122607.750
|
7.753
|
16.500
|
29.128
|
11.874
|
49.907
|
50.093
|
15.770
|
13.358
|
48.609
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
129.614
|
0.937
|
2.172
|
2.828
|
17.113
|
270.425
|
3.643
|
323.711
|
34.917
|
308.062
|
191.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
2.572
|
3.992
|
-6.202
|
— |
-6.326
|
-3.240
|
— |
-3.691
|
— | — |