Hg_chrom2_TN10mRNA_4319
Organism: Heterodera glycines Gene Locus: chr2:13628320-13635305 Feature type: polypeptideProtein Sequence
Length: 1,147
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.649 | 1.318 | 1.078 | 1.413 | 1.206 | 0.917 | 0.727 | 0.872 | 1.434 | 0.86 | 1.493 | 0.923 | 1.453 | 0.972 | 0.907 | 0.859 | 1.072 | 0.634 | 1.14 | 0.846 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4097
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
FKRR,RKDKRAR,KTKGKRRRKRQAKP,RREGETKSFWGYWKDKSK
|
— | — | — | — |
1-19
|
0.997
|
1.000
|
0.000
|
0.000
|
0.260
|
0.119
|
0.037
|
0.145
|
0.142
|
0.065
|
0.140
|
0.014
|
0.210
|
0.805
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000243
|
9.000
|
1.000
|
Hsc_gene_11615.t1
|
Hsc_gene_11669.t1;Hsc_gene_11669.t2
|
— |
Q21180.1 Zinc metalloproteinase nas-16 [Caenorhabditis elegans]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
-0.420
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.796|GO:0032501_0.622|GO:0005575_0.526|GO:0110165_0.525|GO:0003674_0.502
|
IPR000742+856-867+|IPR001506+641-836_650-831_675-693_730-748_780-795_818-831+|IPR006026+646-785+|IPR024079+591-834+
|
SM00235+646-785+
|
PF01400+650-831+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+593-932+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
187-262
|
2.000
|
1-186;263-1147
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
130172.330
|
8.049
|
23.000
|
29.207
|
11.334
|
51.003
|
48.997
|
16.042
|
13.165
|
49.172
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
129.614
|
0.937
|
2.172
|
2.828
|
17.113
|
270.425
|
3.643
|
323.711
|
34.917
|
308.062
|
191.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
2.572
|
3.992
|
-6.202
|
— |
-6.326
|
-3.240
|
— |
-3.691
|
— | — |