Hg_chrom2_TN10mRNA_4322
Organism: Heterodera glycines Gene Locus: chr2:13656260-13658501 Feature type: polypeptideProtein Sequence
Length: 204
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.513 | 0.57 | 0.267 | 0.507 | 0.735 | 1.76 | 1.05 | 1.471 | 0.871 | 0.861 | 1.634 | 1.442 | 0.545 | 0.566 | 3.201 | 0.56 | 1.125 | 0.817 | 1.885 | 1.298 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4100
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRKCWKRQNTVEFHRKR.,RRLGYKAKQGFLIYRVRIR,TSAGRKSRGLGKGMKHTKTIGGSRRKCWKR
|
49-69
|
0.988
|
32-70
|
0.823
|
— | — |
0.000
|
— | — |
0.388
|
0.341
|
0.035
|
0.590
|
0.400
|
0.065
|
0.144
|
0.003
|
0.185
|
0.109
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003441
|
2.000
|
1.000
|
Hsc_gene_11679.t1
|
Hsc_gene_11679.t1;Hsc_gene_18080.t1
|
— |
P91374.1 Large ribosomal subunit protein eL15 [Caenorhabditis elegans]
|
KAF7637209.1 Ribosomal protein L15 [Meloidogyne graminicola]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.907|GO:0110165_0.903|GO:0005622_0.805|GO:0043226_0.795|GO:0043229_0.795|GO:0043228_0.676|GO:0043232_0.676|GO:0016020_0.614|GO:0043227_0.597|GO:0043231_0.580|GO:0003674_0.570|GO:0005737_0.562
|
IPR000439+1-204_2-190_2-193+|IPR012678+1-194+|IPR020925+46-69+|IPR024794+1-204+
|
SM01384+2-193+
|
PF00827+2-190+Ribosomal_L15
|
G3DSA:3.40.1120.10:FF:000001+1-204+Ribosomal_protein_L15
|
PTHR11847+1-204+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
143-204
|
1.000
|
1-142
|
9qqb_BN
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.966
|
24312.330
|
12.043
|
45.000
|
35.294
|
11.765
|
55.392
|
44.608
|
29.412
|
5.882
|
37.745
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
4241.017
|
1387.113
|
2389.067
|
5247.935
|
5253.043
|
4072.592
|
2798.335
|
1341.591
|
7427.178
|
4550.435
|
5783.325
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.555
|
1.782
|
1.244
|
— |
-0.352
|
-0.532
|
-1.709
|
1.203
|
— | — | — | — | — |
No JSON data available for plots.