Hg_chrom2_TN10mRNA_4323
Organism: Heterodera glycines Gene Locus: chr2:13659010-13662797 Feature type: polypeptideProtein Sequence
Length: 243
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.574 | 0.67 | 1.048 | 0.71 | 0.686 | 1.583 | 0.882 | 1.852 | 1.097 | 1.446 | 0.935 | 1.452 | 1.372 | 0.791 | 1.008 | 1.352 | 0.54 | 1.185 | 0.317 | 1.089 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4101
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
cytoplasm|mitochondrion
|
— |
RRRFK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.446
|
0.672
|
0.055
|
0.640
|
0.053
|
0.243
|
0.133
|
0.134
|
0.155
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007287
|
1.000
|
1.000
|
Hsc_gene_11680.t1
|
Hsc_gene_11680.t1
|
— |
Q966M5.1 Mediator of RNA polymerase II transcription subunit 18 [Caenorhabditis elegans]
|
KAI1728483.1 med18 protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003712|GO:0006357|GO:0016592
|
GO:0005575_0.894|GO:0110165_0.894|GO:0005622_0.851|GO:0016020_0.806|GO:0043226_0.800|GO:0043229_0.785|GO:0043227_0.771|GO:0043231_0.758|GO:0005634_0.634
|
IPR019095+51-240_53-97_110-240+
|
— |
PF09637+53-97_110-240+Med18_protein
|
— |
PTHR13321+51-240+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-243
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.811
|
27242.260
|
8.341
|
7.500
|
24.691
|
12.757
|
46.502
|
53.498
|
14.815
|
9.877
|
47.737
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
959.882
|
734.057
|
511.794
|
557.258
|
738.600
|
525.207
|
1348.434
|
469.195
|
111.572
|
2284.102
|
1353.017
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.751
|
-0.535
|
0.232
|
0.374
|
-0.477
|
1.371
|
— |
1.666
|
-4.474
|
— | — | — | — |
No JSON data available for plots.