Hg_chrom2_TN10mRNA_4324
Organism: Heterodera glycines Gene Locus: chr2:13662986-13670509 Feature type: polypeptideProtein Sequence
Length: 579
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.024 | 1.084 | 1.413 | 0.655 | 1.18 | 1.24 | 1.151 | 0.691 | 0.768 | 1.097 | 0.968 | 1.016 | 0.816 | 0.93 | 1.551 | 0.642 | 0.595 | 0.994 | 1.196 | 0.762 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4102
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RGRKKKK,KRGQLGNVKPMLRRIHK
|
13-33
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.152
|
0.917
|
0.081
|
0.201
|
0.091
|
0.050
|
0.097
|
0.014
|
0.045
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003442
|
2.000
|
1.000
|
Hsc_gene_11681.t1
|
Hsc_gene_11683.t1
|
— |
Q9I7M2.2 GTP-binding protein 10 homolog [Drosophila melanogaster]
|
KAI1714495.1 50S ribosome-binding GTPase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.763|GO:0110165_0.761|GO:0005622_0.687|GO:0003674_0.671|GO:0005737_0.563|GO:0016020_0.559|GO:0008150_0.548|GO:0043226_0.536|GO:0005488_0.521|GO:0043229_0.517
|
IPR006073+270-290_270-479_292-310+|IPR006169+101-267_174-252+|IPR027417+263-534_268-551+|IPR036726+100-266_175-264+|IPR045086+102-549+
|
— |
PF01018+174-252+GTP1/OBG|PF01926+270-479+50S_ribosome-binding_GTPase
|
— |
PTHR11702+102-549+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
40-95;150-202;323-384
|
4.000
|
1-39;96-149;203-322;385-579
|
7o9k_G
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.689
|
64218.190
|
6.337
|
-1.000
|
30.225
|
8.463
|
47.841
|
52.159
|
15.371
|
14.853
|
52.332
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
1133.293
|
943.222
|
812.394
|
1140.511
|
1424.611
|
992.669
|
1450.251
|
528.433
|
580.524
|
1788.227
|
1270.640
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.446
|
0.137
|
0.599
|
0.289
|
-0.506
|
0.557
|
-1.015
|
1.599
|
— | — | — | — | — |
No JSON data available for plots.