Hg_chrom2_TN10mRNA_4327
Organism: Heterodera glycines Gene Locus: chr2:13686504-13692761 Feature type: polypeptideProtein Sequence
Length: 685
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.696 | 1.528 | 0.584 | 1.158 | 0.633 | 1.422 | 0.4 | 1.533 | 1.427 | 1.105 | 0.995 | 1.803 | 1.703 | 0.983 | 1.192 | 1.356 | 0.67 | 0.752 | 1.46 | 0.988 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4104
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_15589
|
— |
30-Not_Clustered
|
0.565
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRVRRK
|
48-88
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.752
|
0.160
|
0.011
|
0.421
|
0.055
|
0.028
|
0.017
|
0.010
|
0.110
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000294
|
3.000
|
6.000
|
Hsc_gene_11618.t1;Hsc_gene_11646.t1;Hsc_gene_11698.t1;Hsc_gene_1459.t1;Hsc_gene_25137.t1;Hsc_gene_7772.t1
|
Hsc_gene_25137.t1
|
— | — |
CAD2165447.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR000536+138-213+|IPR035500+139-196+
|
— |
PF00104+138-213+Ligand-binding_domain_of_nuclear_hormone_receptor
|
— |
PTHR45886+137-185+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-685
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
79091.360
|
9.895
|
47.500
|
22.482
|
14.453
|
48.175
|
51.825
|
15.474
|
7.007
|
46.131
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
449.447
|
4.452
|
274.927
|
348.159
|
175.943
|
38.931
|
23.217
|
108.930
|
1083.139
|
788.517
|
914.784
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.725
|
6.156
|
0.448
|
-1.017
|
-2.162
|
-0.739
|
1.380
|
-2.091
|
— | — | — | — | — |
No JSON data available for plots.