Hg_chrom2_TN10mRNA_4332
Organism: Heterodera glycines Gene Locus: chr2:13808945-13809877 Feature type: polypeptideProtein Sequence
Length: 157
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.444 | 1.037 | 0.232 | 1.977 | 0.531 | 0.163 | 0.682 | 2.548 | 1.274 | 1.894 | 0.386 | 0.749 | 2.477 | 1.592 | 2.08 | 1.001 | 0.835 | 0.676 | 0.49 | 0.562 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4109
|
— | — |
2.222
|
1.000
|
3.000
|
1.000
|
2.000
|
3.000
|
2.000
|
1.000
|
3.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.712
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — |
24-46
|
0.982
|
— | — |
0.000
|
— | — |
0.196
|
0.123
|
0.035
|
0.306
|
0.646
|
0.464
|
0.363
|
0.080
|
0.479
|
0.213
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001888
|
1.000
|
3.000
|
Hsc_gene_23141.t1;Hsc_gene_23142.t1;Hsc_gene_349.t1
|
Hsc_gene_23141.t1;Hsc_gene_23142.t1;Hsc_gene_349.t1
|
— | — |
KAI3416475.1 hypothetical protein GPALN_006015 [Globodera pallida];KAI3420910.1 hypothetical protein GPALN_014538 [Globodera pallida]
|
RDX54561
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-157
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.659
|
18027.330
|
10.362
|
17.000
|
22.293
|
16.561
|
39.490
|
60.510
|
17.834
|
4.459
|
45.860
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
29.820
|
8.108
|
23.852
|
28.143
|
6.790
|
3.015
|
4.266
|
17.726
|
125.017
|
2.239
|
54.858
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.327
|
1.659
|
— |
-2.070
|
— | — |
2.466
|
-1.918
|
— | — | — | — | — |
No JSON data available for plots.