Hg_chrom2_TN10mRNA_4334
Organism: Heterodera glycines Gene Locus: chr2:13858796-13859887 Feature type: polypeptideProtein Sequence
Length: 216
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.915 | 0.646 | 0.926 | 0.798 | 0.386 | 1.662 | 0.937 | 0.694 | 0.926 | 1.189 | 0.421 | 1.089 | 1.672 | 1.603 | 0.945 | 1.587 | 0.987 | 0.912 | 1.068 | 0.817 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4111
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
Hsc_gene_1847;Hsc_gene_1848
|
— | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.102
|
0.198
|
0.047
|
0.263
|
0.067
|
0.128
|
0.122
|
0.103
|
0.222
|
0.964
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003443
|
2.000
|
1.000
|
Hsc_gene_1847.t1
|
Hsc_gene_1847.t1;Hsc_gene_1848.t1;Hsc_gene_21050.t1
|
— |
Q11174.1 Probable endochitinase [Caenorhabditis elegans]
|
KAH7732349.1 CRE-CHT-1 protein [Aphelenchus avenae]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576|GO:0005975|GO:0008061
|
GO:0008150_0.850|GO:0005575_0.841|GO:0110165_0.837|GO:0003674_0.688|GO:0005622_0.513
|
IPR001223+1-85_5-58+|IPR002557+139-197_142-192+|IPR017853+29-87+|IPR036508+152-192+|IPR050314+4-88+
|
— |
PF00704+5-58+Glycosyl_hydrolases_family_18|PF01607+142-192+Chitin_binding_Peritrophin-A_domain
|
— |
PTHR11177+4-88+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-216
|
6le8_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.894
|
23429.570
|
7.164
|
1.500
|
16.204
|
11.574
|
42.593
|
57.407
|
8.796
|
7.407
|
57.407
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
27.382
|
10.525
|
7.373
|
8.972
|
9.679
|
14.713
|
75.309
|
24.680
|
8.672
|
56.573
|
36.044
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
2.365
|
— |
1.756
|
— | — | — | — | — |
No JSON data available for plots.