Hg_chrom2_TN10mRNA_4339
Organism: Heterodera glycines Gene Locus: chr2:13941132-13956654 Feature type: polypeptideProtein Sequence
Length: 547
(Signal peptide: 1-34)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.063 | 0.935 | 0.864 | 0.252 | 1.005 | 3.281 | 0.74 | 1.371 | 1.016 | 0.963 | 0.609 | 1.613 | 1.473 | 0.527 | 1.157 | 0.81 | 1.169 | 0.72 | 0.703 | 0.86 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4116
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
mitochondria
|
— |
42-62
|
0.995
|
— | — |
1-34
|
— |
0.991
|
— |
1.000
|
0.124
|
0.103
|
0.015
|
0.201
|
0.670
|
0.304
|
0.696
|
0.123
|
0.289
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007290
|
1.000
|
1.000
|
Hsc_gene_4121.t1
|
Hsc_gene_4121.t1
|
— |
Q9D0F3.1 Protein ERGIC-53 [Mus musculus]
|
KAF7637741.1 L-type lectin-like domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.895|GO:0110165_0.895|GO:0071944_0.827|GO:0016020_0.789|GO:0005886_0.760|GO:0005622_0.745|GO:0008150_0.720|GO:0043226_0.702|GO:0009987_0.683|GO:0043229_0.676|GO:0043227_0.656|GO:0005737_0.644|GO:0043231_0.612|GO:0005773_0.570|GO:0012505_0.556|GO:0051179_0.503
|
IPR005052+40-263_41-264+|IPR013320+40-265+|IPR051136+17-367+
|
— |
PF03388+41-264+Legume-like_lectin_family
|
G3DSA:2.60.120.200:FF:000028+38-271+Blast:Protein_ERGIC-53
|
PTHR12223+17-367+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
275-396
|
2.000
|
1-274;397-547
|
3a4u_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
62072.400
|
6.669
|
1.500
|
23.218
|
11.883
|
52.834
|
47.166
|
12.431
|
10.786
|
45.155
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1961.007
|
2069.415
|
1101.189
|
1255.024
|
1288.215
|
1611.862
|
675.392
|
1096.688
|
4953.725
|
1452.443
|
2952.992
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.139
|
-0.859
|
0.296
|
— |
0.339
|
-1.245
|
-0.659
|
-0.557
|
— |
-1.813
|
— | — | — |