Hg_chrom2_TN10mRNA_4343
Organism: Heterodera glycines Gene Locus: chr2:13974231-13976204 Feature type: polypeptideProtein Sequence
Length: 100
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.349 | 1.395 | 0.545 | 1.034 | 1.333 | 0.513 | 0.833 | 3.5 | 1.111 | 1.757 | 2.273 | 1.176 | 1.111 | 0.385 | 0.0 | 0.429 | 0.656 | 1.515 | 0.0 | 0.882 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4119
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_24272
|
— |
6-pJ2_J3_J4_Male
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|endoplasmic_reticulum
|
nucleus
|
KKVNGKDVKEYLEGKKGVK
|
— | — | — | — |
1-28
|
0.996
|
1.000
|
0.000
|
0.000
|
0.465
|
0.608
|
0.266
|
0.684
|
0.640
|
0.161
|
0.109
|
0.036
|
0.262
|
0.231
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007291
|
1.000
|
1.000
|
Hsc_gene_24272.t1
|
— | — | — |
XP_012152317.1 PREDICTED: cytochrome b5-like isoform X4 [Megachile rotundata]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.923|GO:0110165_0.921|GO:0005622_0.826|GO:0005737_0.799|GO:0016020_0.760|GO:0043226_0.751|GO:0043229_0.737|GO:0043227_0.700|GO:0043231_0.700|GO:0008150_0.657|GO:0003674_0.510
|
IPR001199+22-100_24-74+|IPR036400+21-99_27-72+
|
— |
PF00173+24-74+Cytochrome_b5-like_Heme/Steroid_binding_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-100
|
1lj0_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.683
|
11370.410
|
9.132
|
7.500
|
33.000
|
14.000
|
48.000
|
52.000
|
22.000
|
11.000
|
41.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
1571.823
|
9.318
|
628.045
|
642.096
|
3996.802
|
7010.934
|
1312.134
|
2382.071
|
222.884
|
716.537
|
504.971
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.842
|
5.967
|
0.141
|
2.606
|
0.825
|
-2.407
|
-1.668
|
-0.714
|
— | — | — | — | — |