Hg_chrom2_TN10mRNA_4352
Organism: Heterodera glycines Gene Locus: chr2:14095638-14101005 Feature type: polypeptideProtein Sequence
Length: 597
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.682 | 2.493 | 1.279 | 0.462 | 1.089 | 2.019 | 0.439 | 3.015 | 1.377 | 0.77 | 0.736 | 1.182 | 1.07 | 1.16 | 1.367 | 0.718 | 0.686 | 0.634 | 0.258 | 0.542 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4128
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_4352
|
22-Not_Clustered
|
0.607
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRRRR
|
— | — | — | — | — | — |
0.001
|
— | — |
0.271
|
0.257
|
0.023
|
0.646
|
0.083
|
0.114
|
0.103
|
0.030
|
0.408
|
0.369
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007294
|
1.000
|
1.000
|
Hsc_gene_23987.t1
|
Hsc_gene_23987.t1
|
— |
O95816.1 BAG family molecular chaperone regulator 2 [Homo sapiens]
|
KAH7730787.1 BAG family molecular chaperone regulator 2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000774|GO:0051087
|
GO:0008150_0.966|GO:0065007_0.905|GO:0005575_0.904|GO:0110165_0.904|GO:0050789_0.901|GO:0003674_0.877|GO:0005488_0.854|GO:0008152_0.836|GO:0043170_0.836|GO:0048518_0.808|GO:0019222_0.805|GO:0044238_0.805|GO:0005515_0.803|GO:0060255_0.795|GO:0080090_0.792|GO:0048519_0.782|GO:0009893_0.762|GO:0010604_0.753|GO:0019538_0.743|GO:0009892_0.726|GO:0010605_0.720|GO:0051246_0.702|GO:0036211_0.699|GO:0043412_0.699|GO:0006508_0.689|GO:0043687_0.685|GO:0070647_0.685|GO:0016567_0.682|GO:0032446_0.682|GO:0051248_0.681|GO:0031399_0.679|GO:0051247_0.678|GO:0030162_0.674|GO:0031400_0.673|GO:0031396_0.670|GO:0031397_0.670|GO:0045862_0.670|GO:1901873_0.670|GO:1901874_0.670|GO:1903320_0.670|GO:1903321_0.670|GO:0005622_0.584|GO:0009987_0.582|GO:0050794_0.551|GO:0016020_0.531
|
IPR037689+415-592+
|
— | — | — |
PTHR12334+415-592+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
120-455;578-597
|
2.000
|
1-119;456-577
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.676
|
68957.210
|
6.791
|
6.000
|
31.156
|
12.060
|
58.961
|
41.039
|
17.588
|
13.568
|
48.074
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1988.230
|
724.683
|
2029.608
|
1515.542
|
2168.365
|
3733.974
|
2031.441
|
6005.020
|
523.806
|
1477.417
|
1068.726
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.258
|
0.927
|
-0.314
|
0.485
|
0.798
|
-0.868
|
— |
-1.428
|
-1.606
|
1.715
|
— | — | — |
No JSON data available for plots.