SCN Proteipedia

Hg_chrom2_TN10mRNA_4357

Organism: Heterodera glycines Gene Locus: chr2:14112414-14119823 Feature type: polypeptide

Protein Sequence

Length: 599

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.893	1.281	1.184	0.921	1.113	1.413	0.696	1.503	1.15	1.083	0.809	1.964	1.067	0.706	1.567	0.763	0.739	1.088	0.771	0.442	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_4132	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.981

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRRR,RIRKRVK	—	—	37-65	0.975	—	—	0.000	—	—	0.688	0.280	0.006	0.345	0.034	0.028	0.050	0.146	0.079	0.114

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001657	3.000	1.000	Hsc_gene_23982.t1	Hsc_gene_23983.t1	—	Q9JJN0.1 DNA polymerase eta [Mus musculus]	KAI1706396.1 impB/mucB/samB family domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003684\|GO:0006281	GO:0008150_0.915\|GO:0009987_0.860\|GO:0050896_0.765\|GO:0051716_0.719\|GO:0008152_0.693\|GO:0044238_0.678\|GO:0043170_0.670\|GO:0006950_0.668\|GO:0044237_0.637\|GO:0009058_0.636\|GO:0033554_0.635\|GO:0006139_0.633\|GO:0006974_0.621\|GO:0005575_0.619\|GO:0044249_0.617\|GO:0090304_0.616\|GO:0009059_0.612\|GO:0110165_0.609\|GO:0003674_0.589\|GO:0034654_0.574\|GO:0006259_0.568\|GO:0141187_0.562\|GO:0005622_0.541\|GO:0006281_0.521\|GO:0071897_0.520\|GO:0016020_0.511	IPR001126+8-265_11-233+\|IPR017961+322-410+\|IPR036775+316-434_321-433+\|IPR043128+79-257+\|IPR043502+5-316+\|IPR052230+4-515+	—	PF00817+11-233+impB/mucB/samB_family\|PF11799+322-410+impB/mucB/samB_family_C-terminal_domain\|PF21704+257-307+DNApol_eta/Rev1,_HhH_motif	G3DSA:3.40.1170.60:FF:000003+15-84+DNA_polymerase_eta	PTHR45873+4-515+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	473-560	2.000	1-472;561-599	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.621	67786.210	7.319	8.000	29.215	9.349	50.083	49.917	16.027	13.189	48.915

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	turquoise	1022.803	621.799	431.547	361.685	387.468	388.506	497.157	406.347	202.936	3162.121	1893.899

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.758	-0.919	-0.145	—	—	0.367	—	0.435	-4.078	—	—	—	—

No JSON data available for plots.

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