Hg_chrom2_TN10mRNA_4360
Organism: Heterodera glycines Gene Locus: chr2:14131834-14137176 Feature type: polypeptideProtein Sequence
Length: 1,078
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.68 | 1.338 | 1.181 | 1.503 | 1.206 | 0.951 | 0.784 | 0.928 | 1.525 | 0.815 | 1.42 | 0.982 | 1.52 | 0.928 | 0.909 | 0.835 | 0.882 | 0.576 | 1.142 | 0.873 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4134
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
FKRR,RKDKRAR,KTKGKRRRKRQAKPNL,RREGETKSFWGYWKDKSK,KKCELNGNGMIRMGKKAKN
|
— | — | — | — |
1-19
|
0.996
|
1.000
|
0.000
|
0.000
|
0.268
|
0.208
|
0.029
|
0.183
|
0.144
|
0.073
|
0.151
|
0.012
|
0.218
|
0.751
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000243
|
9.000
|
1.000
|
Hsc_gene_11615.t1
|
Hsc_gene_11669.t1;Hsc_gene_11669.t2
|
— |
Q21180.1 Zinc metalloproteinase nas-16 [Caenorhabditis elegans]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
-0.350
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.825|GO:0032501_0.651|GO:0005575_0.526|GO:0110165_0.526|GO:0032502_0.523|GO:0048856_0.523
|
IPR000742+787-798+|IPR001506+572-767_581-762_606-624_661-679_711-726_749-762+|IPR006026+577-716+|IPR024079+516-765+
|
SM00235+577-716+
|
PF01400+581-762+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+520-863+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1078
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.726
|
122346.080
|
7.344
|
11.000
|
29.406
|
11.781
|
50.093
|
49.907
|
15.677
|
13.729
|
48.887
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
186.071
|
2.588
|
2.440
|
6.583
|
18.090
|
485.991
|
3.454
|
714.235
|
12.985
|
341.804
|
200.882
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
1.556
|
1.423
|
4.763
|
-7.129
|
0.446
|
-7.549
|
— | — | — | — | — |