Hg_chrom2_TN10mRNA_4364
Organism: Heterodera glycines Gene Locus: chr2:14196332-14199397 Feature type: polypeptideProtein Sequence
Length: 250
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.884 | 0.558 | 1.527 | 0.966 | 0.4 | 1.128 | 0.667 | 0.8 | 1.511 | 0.919 | 0.667 | 1.882 | 1.0 | 1.538 | 1.143 | 1.314 | 0.918 | 0.848 | 1.846 | 1.059 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4137
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.736
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
extracellular
|
— | — | — | — |
60-81
|
0.979
|
— | — |
0.000
|
— | — |
0.182
|
0.213
|
0.101
|
0.282
|
0.205
|
0.538
|
0.211
|
0.100
|
0.486
|
0.668
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003446
|
2.000
|
1.000
|
Hsc_gene_23979.t1
|
Hsc_gene_23979.t1
|
— |
Q04833.1 Low-density lipoprotein receptor-related protein [Caenorhabditis elegans]
|
KAH7701212.1 very low-density lipoprotein receptor, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.931|GO:0005575_0.879|GO:0110165_0.866|GO:0009987_0.854|GO:0065007_0.806|GO:0050789_0.791|GO:0016020_0.784|GO:0005622_0.730|GO:0005737_0.707|GO:0050794_0.703|GO:0043226_0.684|GO:0043229_0.683|GO:0043227_0.673|GO:0051179_0.663|GO:0043231_0.662|GO:0051234_0.653|GO:0006810_0.651|GO:0048518_0.644|GO:0032501_0.599|GO:0071944_0.595|GO:0032502_0.588|GO:0048856_0.588|GO:0007275_0.574|GO:0005886_0.564|GO:0033036_0.558|GO:0003674_0.533|GO:0008152_0.527
|
IPR011042+1-91_92-250+|IPR051221+1-246+
|
— | — | — |
PTHR22722+1-246+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-250
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.741
|
27875.800
|
6.470
|
0.000
|
22.400
|
11.200
|
44.000
|
56.000
|
11.600
|
10.800
|
55.200
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
102.711
|
67.674
|
153.216
|
60.390
|
89.814
|
144.209
|
95.116
|
173.557
|
0.000
|
155.368
|
88.782
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.950
|
-0.302
|
-1.235
|
0.539
|
0.699
|
-0.592
|
— |
-0.726
|
-8.062
|
6.773
|
— | — | — |
No JSON data available for plots.