Hg_chrom2_TN10mRNA_4365
Organism: Heterodera glycines Gene Locus: chr2:14199996-14203611 Feature type: polypeptideProtein Sequence
Length: 240
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.921 | 0.775 | 0.758 | 2.299 | 0.625 | 0.855 | 0.843 | 1.25 | 1.574 | 0.788 | 0.758 | 1.471 | 0.347 | 1.122 | 1.871 | 0.714 | 1.161 | 1.326 | 0.962 | 0.735 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4138
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.518
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
RRKRR
|
54-74
|
0.818
|
— | — | — | — |
0.000
|
— | — |
0.244
|
0.537
|
0.087
|
0.220
|
0.098
|
0.029
|
0.087
|
0.182
|
0.431
|
0.864
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007298
|
2.000
|
0.000
|
0.000
|
Hsc_gene_23979.t1
|
— |
Q04833.1 Low-density lipoprotein receptor-related protein [Caenorhabditis elegans]
|
KAI1728970.1 low-density lipoprotein receptor domain class A domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.933|GO:0009987_0.750|GO:0005575_0.725|GO:0110165_0.672|GO:0065007_0.662|GO:0050789_0.652|GO:0051179_0.594|GO:0006810_0.590|GO:0051234_0.590|GO:0032501_0.573|GO:0005622_0.552|GO:0016020_0.537|GO:0050794_0.527|GO:0048518_0.513
|
IPR000033+57-100_77-120_78-118_101-144+|IPR011042+30-166+|IPR050778+45-148+
|
SM00135+57-100_101-144+
|
PF00058+78-118+Low-density_lipoprotein_receptor_repeat_class_B
|
— |
PTHR46513+45-148+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-240
|
8jxj_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.647
|
26515.940
|
9.161
|
18.000
|
24.583
|
7.500
|
43.333
|
56.667
|
16.667
|
7.917
|
55.833
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
magenta
|
335.670
|
277.087
|
575.852
|
249.577
|
445.736
|
754.940
|
348.426
|
767.436
|
16.236
|
174.235
|
106.522
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.828
|
-0.288
|
-1.099
|
0.804
|
0.775
|
-1.106
|
— |
-0.997
|
— |
4.120
|
5.070
|
— | — |
No JSON data available for plots.