Hg_chrom2_TN10mRNA_4369
Organism: Heterodera glycines Gene Locus: chr2:14249300-14287027 Feature type: polypeptideProtein Sequence
Length: 4,315
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.428 | 0.76 | 0.826 | 0.272 | 1.02 | 2.644 | 0.853 | 1.298 | 0.628 | 0.836 | 0.839 | 1.84 | 0.592 | 1.056 | 0.672 | 1.503 | 1.011 | 0.755 | 0.481 | 0.6 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4142
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRK,KRKL,RKKR,RFGKRKI,KNRSSKRSRRRVG,KKKKLERKEEKEEKK,KRRSTRKVTGAKKAKY,KKEEESQKDGEKKEEK,KRKIVTKKKKLERKEEK,KKEEKSSGKDEEEKKEKE,RKINFRVCVIDEAHRIKNR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.935
|
0.052
|
0.013
|
0.245
|
0.054
|
0.024
|
0.025
|
0.003
|
0.088
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007299
|
1.000
|
1.000
|
Hsc_gene_22068.t1
|
Hsc_gene_22068.t1;Hsc_gene_22069.t1
|
— |
B5DE69.2 Chromodomain-helicase-DNA-binding protein 8 [Xenopus tropicalis]
|
KAI1731410.1 chromo (CHRromatin organization MOdifier) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005524|GO:0140658
|
GO:0005575_0.906|GO:0110165_0.905|GO:0008150_0.871|GO:0005622_0.856|GO:0009987_0.855|GO:0043226_0.831|GO:0016020_0.812|GO:0043229_0.801|GO:0003674_0.748|GO:0005488_0.748|GO:0065007_0.704|GO:0043227_0.697|GO:0050789_0.688|GO:0050794_0.666|GO:0005634_0.648|GO:0043231_0.648|GO:0005515_0.571|GO:0032502_0.541|GO:0048856_0.541|GO:0016043_0.537|GO:0071840_0.537|GO:0008152_0.519|GO:0043170_0.519|GO:0009058_0.518|GO:0009059_0.518|GO:0010467_0.518|GO:0044237_0.518|GO:0044249_0.518|GO:0043228_0.504|GO:0043232_0.504
|
IPR000330+1861-2144+|IPR000953+1580-1750_1768-1822_1770-1809+|IPR001650+2180-2293_2182-2352_2208-2293+|IPR006576+3413-3453_3413-3457+|IPR014001+1854-2054_1870-2042+|IPR016197+1705-1748_1761-1820+|IPR023780+1771-1820+|IPR027417+1800-2077_2079-2360_2087-2324+|IPR037259+3409-3454_3410-3458+|IPR038718+1852-2086+|IPR049730+2161-2304+
|
SM00298+1580-1750_1768-1822+|SM00487+1854-2054+|SM00490+2208-2293+|SM00592+3413-3457+
|
PF00176+1861-2144+SNF2-related_domain|PF00271+2180-2293+Helicase_conserved_C-terminal_domain|PF00385+1771-1820+Chromo_(CHRromatin_Organisation_MOdifier)_domain|PF07533+3413-3453+BRK_domain
|
G3DSA:3.40.50.300:FF:000015+2087-2324+chromodomain-helicase-DNA-binding_protein_9_isoform_X1
|
PTHR45623+1535-3302+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-543;597-1714;2433-2527;2991-3177;3214-3366;3471-3701;3944-4315
|
6.000
|
544-596;1715-2432;2528-2990;3178-3213;3367-3470;3702-3943
|
6ftx_W
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
462163.350
|
6.176
|
-23.000
|
22.086
|
7.393
|
52.352
|
47.648
|
11.425
|
10.660
|
55.203
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkmagenta
|
9689.247
|
11335.161
|
7684.909
|
5684.181
|
3779.475
|
4487.178
|
2702.113
|
4747.920
|
11937.014
|
18279.845
|
15561.489
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.790
|
-1.133
|
-0.327
|
-0.621
|
0.262
|
-0.722
|
— |
-0.671
|
— | — |
-1.935
|
— | — |
No JSON data available for plots.