Hg_chrom2_TN10mRNA_4372
Organism: Heterodera glycines Gene Locus: chr2:14332671-14342815 Feature type: polypeptideProtein Sequence
Length: 815
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.628 | 1.484 | 0.87 | 0.931 | 0.9 | 0.849 | 0.628 | 1.288 | 1.854 | 1.128 | 1.06 | 1.877 | 1.943 | 0.897 | 0.801 | 1.034 | 0.704 | 0.837 | 0.472 | 1.191 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4145
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.496
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-17
|
0.794
|
0.995
|
0.000
|
0.000
|
0.196
|
0.200
|
0.029
|
0.469
|
0.150
|
0.117
|
0.191
|
0.090
|
0.409
|
0.649
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001893
|
2.000
|
2.000
|
Hsc_gene_13624.t1;Hsc_gene_13624.t2
|
Hsc_gene_13624.t1;Hsc_gene_13624.t2
|
— |
Q6L711.1 Hyaluronan-binding protein 2 [Rattus norvegicus]
|
AGW99258.1 serine protease, partial [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.715|GO:0005575_0.671|GO:0003674_0.651|GO:0110165_0.648|GO:0003824_0.527
|
IPR001254+488-756_489-764_490-750+|IPR001314+523-538_602-616_700-712+|IPR009003+467-750+|IPR018114+533-538+|IPR043504+482-753+|IPR051487+485-750+
|
SM00020+488-756+
|
PF00089+490-750+Trypsin
|
— |
PTHR24256+485-750+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-815
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.778
|
92947.440
|
8.021
|
16.500
|
23.681
|
14.233
|
44.908
|
55.092
|
13.497
|
10.184
|
46.258
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
blue
|
827.656
|
29.695
|
213.773
|
282.112
|
235.366
|
170.215
|
148.335
|
180.334
|
228.374
|
2977.277
|
1799.176
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.621
|
3.111
|
0.506
|
-0.293
|
-0.454
|
— | — | — |
-3.818
|
— |
-3.236
|
— | — |