SCN Proteipedia

Hg_chrom2_TN10mRNA_4374

Organism: Heterodera glycines Gene Locus: chr2:14506710-14533957 Feature type: polypeptide

Protein Sequence

Length: 3,147

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.375	1.049	1.138	0.471	0.98	1.108	0.987	1.065	0.883	1.086	0.587	1.103	0.936	0.794	1.154	1.294	1.203	0.847	0.611	0.505	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_4147	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	RRKLWEKARMKKKQV,KKLVELRNSESRRRPA,KKDNKKKSAIAFVLKCRRV,RRFRKKGDAGGGGGGGRKP	—	—	—	—	—	—	0.000	—	—	0.565	0.215	0.021	0.482	0.161	0.199	0.190	0.027	0.235	0.044

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000543	2.000	5.000	Hsc_gene_15157.t1;Hsc_gene_15157.t2;Hsc_gene_15157.t3;Hsc_gene_15157.t4;Hsc_gene_15157.t5	Hsc_gene_15157.t1;Hsc_gene_15157.t2;Hsc_gene_15157.t3;Hsc_gene_15157.t4;Hsc_gene_15157.t5	—	Q80TP3.2 E3 ubiquitin-protein ligase UBR5 [Mus musculus]	KAI1720415.1 HECT-domain (ubiquitin-transferase) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004842\|GO:0008270\|GO:0043130	GO:0008150_0.896\|GO:0003674_0.796\|GO:0009987_0.745\|GO:0005575_0.717\|GO:0110165_0.717\|GO:0008152_0.710\|GO:0044238_0.677\|GO:0065007_0.664\|GO:0043170_0.653\|GO:0003824_0.636\|GO:0050789_0.624\|GO:0019538_0.618\|GO:0005622_0.607\|GO:0050794_0.595\|GO:0140096_0.581\|GO:0016020_0.579\|GO:0016740_0.564\|GO:0016746_0.546\|GO:0050896_0.536\|GO:0016755_0.533\|GO:0019787_0.533\|GO:0004842_0.532\|GO:0043226_0.511	IPR000569+2699-3147_2842-3147_2848-3146+\|IPR003126+1170-1237_1170-1238+\|IPR009091+280-419+\|IPR024725+158-207_163-204+\|IPR035983+2702-3140+	SM00119+2699-3147+\|SM00396+1170-1237+	PF00632+2848-3146+HECT-domain_(ubiquitin-transferase)\|PF11547+158-207+E3_ubiquitin_ligase_EDD	G3DSA:1.10.8.10:FF:000009+156-208+Putative_E3_ubiquitin-protein_ligase_UBR5	PTHR46276+249-1777+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	81-126;496-580;911-1077;1623-2062;2179-2303;2664-2844	7.000	1-80;127-495;581-910;1078-1622;2063-2178;2304-2663;2845-3147	3pt3_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.655	336426.490	5.290	-48.500	23.800	8.008	49.031	50.969	11.662	12.139	58.373

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	10340.289	18380.071	6578.072	7910.688	8985.168	7467.455	6788.903	4394.613	6096.698	17976.878	12885.372

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.712	-1.353	0.375	0.152	-0.252	—	-0.872	0.771	—	—	—	—	—

No JSON data available for plots.

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