Hg_chrom2_TN10mRNA_4379
Organism: Heterodera glycines Gene Locus: chr2:14571725-14575325 Feature type: polypeptideProtein Sequence
Length: 668
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.661 | 1.95 | 0.381 | 0.671 | 0.574 | 2.917 | 0.677 | 1.946 | 1.098 | 0.931 | 0.34 | 1.673 | 1.123 | 1.785 | 0.917 | 1.411 | 0.736 | 0.93 | 0.576 | 0.44 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4152
|
— | — |
1.889
|
2.000
|
3.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
4.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
1-21
|
0.999
|
13-46
|
0.832
|
— | — |
0.000
|
— | — |
0.506
|
0.093
|
0.007
|
0.635
|
0.114
|
0.047
|
0.144
|
0.037
|
0.089
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001166
|
2.000
|
3.000
|
Hsc_gene_26517.t1;Hsc_gene_26517.t2;Hsc_gene_26517.t3
|
— | — |
P0CH02.1 Putative RING-H2 finger protein ATL21B [Arabidopsis thaliana]
|
XP_044756033.1 E3 ubiquitin-protein ligase Iruka [Coccinella septempunctata]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.918|GO:0003674_0.723|GO:0005575_0.706|GO:0110165_0.679|GO:0008152_0.668|GO:0044238_0.664|GO:0043170_0.657|GO:0005622_0.599|GO:0019538_0.570|GO:0003824_0.547|GO:0140096_0.547|GO:0016020_0.532|GO:0016740_0.528|GO:0016746_0.528|GO:0016755_0.528|GO:0019787_0.528|GO:0004842_0.526|GO:0009987_0.525|GO:0065007_0.517|GO:0043226_0.513|GO:0050896_0.511
|
IPR001841+622-664_623-663_623-664+|IPR013083+597-668+
|
SM00184+623-663+
|
PF13639+622-664+Ring_finger_domain
|
— |
PTHR45977+137-667+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
105-302;421-609
|
3.000
|
1-104;303-420;610-668
|
2ect_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.963
|
73945.170
|
8.559
|
21.000
|
16.168
|
10.180
|
50.299
|
49.701
|
10.629
|
5.539
|
53.593
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
24.035
|
1.718
|
6.107
|
4.247
|
4.277
|
3.374
|
1.528
|
24.223
|
0.000
|
88.100
|
50.343
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2.743
|
-3.849
|
-7.237
|
— |
-4.023
|
— | — |
No JSON data available for plots.