Hg_chrom2_TN10mRNA_4386
Organism: Heterodera glycines Gene Locus: chr2:14689709-14691410 Feature type: polypeptideProtein Sequence
Length: 168
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.177 | 1.246 | 2.165 | 1.437 | 0.992 | 1.526 | 0.425 | 1.488 | 1.455 | 1.207 | 1.082 | 2.101 | 0.827 | 0.801 | 1.093 | 0.51 | 0.976 | 0.09 | 0.458 | 0.175 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_4159
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
nucleus
|
KKATNTECPICFDGFKKDR
|
— | — | — | — |
1-24
|
0.959
|
1.000
|
0.000
|
0.000
|
0.409
|
0.154
|
0.017
|
0.545
|
0.207
|
0.163
|
0.284
|
0.039
|
0.223
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001167
|
2.000
|
3.000
|
Hsc_gene_9640.t1;Hsc_gene_9642.t1;Hsc_gene_9642.t2
|
— | — | — |
CAA0833760.1 E3 ubiquitin-protein ligase ATL23 [Striga hermonthica]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016567|GO:0016740
|
GO:0008150_0.943|GO:0003674_0.795|GO:0008152_0.668|GO:0003824_0.594|GO:0005575_0.582|GO:0050896_0.576|GO:0043170_0.575|GO:0110165_0.575|GO:0140096_0.575|GO:0016740_0.573|GO:0016746_0.562|GO:0016755_0.562|GO:0019787_0.562|GO:0004842_0.561|GO:0044238_0.554|GO:0009987_0.545|GO:0019538_0.523
|
IPR001841+34-76_35-75_35-76+|IPR013083+20-89+|IPR044600+28-155+
|
SM00184+35-75+
|
PF13639+34-76+Ring_finger_domain
|
— |
PTHR46913+28-155+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
88-168
|
1.000
|
1-87
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.836
|
18948.330
|
4.783
|
-6.500
|
33.333
|
7.143
|
54.167
|
45.833
|
15.476
|
17.857
|
49.405
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
136.798
|
0.078
|
24.741
|
36.148
|
2.627
|
0.000
|
0.201
|
0.828
|
675.513
|
67.625
|
328.149
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8.002
|
8.643
|
0.659
|
-3.808
|
-5.233
|
— | — | — |
3.278
|
-4.074
|
— | — | — |